LOCUS       NM_025918               2307 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 43 (Ccdc43), mRNA.
ACCESSION   NM_025918
VERSION     NM_025918.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2307)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   2  (bases 1 to 2307)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL672269.15.
            
            On Apr 29, 2007 this sequence version replaced NM_025918.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK011254.1, BC061076.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849389, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-215               AL672269.15        122319-122533       c
            216-303             AL672269.15        116919-117006       c
            304-439             AL672269.15        115009-115144       c
            440-498             AL672269.15        113609-113667       c
            499-2307            AL672269.15        109496-111304       c
FEATURES             Location/Qualifiers
     source          1..2307
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 66.48 cM"
     gene            1..2307
                     /gene="Ccdc43"
                     /gene_synonym="2610001E01Rik; D11Ertd707e"
                     /note="coiled-coil domain containing 43"
                     /db_xref="GeneID:52715"
                     /db_xref="MGI:MGI:1289318"
     exon            1..215
                     /gene="Ccdc43"
                     /gene_synonym="2610001E01Rik; D11Ertd707e"
                     /inference="alignment:Splign:2.1.0"
     CDS             18..686
                     /gene="Ccdc43"
                     /gene_synonym="2610001E01Rik; D11Ertd707e"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 43"
                     /protein_id="NP_080194.1"
                     /db_xref="CCDS:CCDS25502.1"
                     /db_xref="GeneID:52715"
                     /db_xref="MGI:MGI:1289318"
                     /translation="MAAPSEVAAAVLGEGDGGAFGSWLDGRLEALGVDRAVYAAYILG
                     VLQEEEEEEKLDALQGILSAFLEEESLLDICKEIVERWSETRDVTTKVKKEDEVQAIA
                     TLIEKQAQIVVKPRVVSEEEKQRKAALLAQYADVTDEEDEADKKDDAGASTANVSSDR
                     TLFRNTNVEDVLNARKLERDSLRDESQRKKEQDKLQREKDKLAKQERKEKEKKRTQKG
                     ERKR"
     exon            216..303
                     /gene="Ccdc43"
                     /gene_synonym="2610001E01Rik; D11Ertd707e"
                     /inference="alignment:Splign:2.1.0"
     exon            304..439
                     /gene="Ccdc43"
                     /gene_synonym="2610001E01Rik; D11Ertd707e"
                     /inference="alignment:Splign:2.1.0"
     exon            440..498
                     /gene="Ccdc43"
                     /gene_synonym="2610001E01Rik; D11Ertd707e"
                     /inference="alignment:Splign:2.1.0"
     exon            499..2307
                     /gene="Ccdc43"
                     /gene_synonym="2610001E01Rik; D11Ertd707e"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1664
                     /gene="Ccdc43"
                     /gene_synonym="2610001E01Rik; D11Ertd707e"
ORIGIN      
        1 aggaccctgt ccccagcatg gcggcgccca gcgaagtggc cgcggcagtc ctcggtgaag
       61 gcgatggcgg ggcttttgga tcctggcttg acggacggtt ggaggcgctg ggagtggacc
      121 gagccgttta cgccgcttac atccttggcg tcctacagga ggaggaggag gaagagaagc
      181 tggacgccct gcagggtatc ctctctgctt tcctggaaga agagtctctc cttgatatct
      241 gtaaggaaat tgtggagcga tggtcagaaa cacgggatgt caccaccaaa gtcaaaaagg
      301 aagatgaggt gcaggccatc gccaccttga ttgagaagca ggcacagatt gtggtgaagc
      361 ccagggtggt ttcagaagaa gagaagcaga ggaaagcagc cctgctggcc cagtatgccg
      421 acgtgacaga cgaagaggat gaagcagata agaaagatga tgcgggtgcc tcaacagcaa
      481 acgtcagttc tgacagaacc ttgttccgaa acaccaatgt ggaagatgtt ctcaatgctc
      541 ggaaattgga gagagactca cttcgggatg agtcccaaag gaagaaggaa caggacaagc
      601 tgcagaggga gaaggacaaa ctagccaagc aggaacgcaa ggagaaggaa aagaaaagga
      661 cacagaaagg cgaacggaag cgataacctt ggcccactct gctccttcca cccatgaatt
      721 gtgtgtctgt gtatttaaga gaactgagac taatgtattt tccaaaattt cctaaggctt
      781 tcccccgttg tttacatgtt gaaaaggaaa atcacaatca cttgtaaatg tgccatgctc
      841 tggtggtgtg ggcagtcaat tattgttaga atctttacca aagatctgga gttagggtag
      901 cctttctatt ttagtactga actcctgtgc ccttcttttt taaaaaggtc ttccctcatt
      961 ttgtatattt agccagatac agaaagctca catcctgaag gaaacatgac cattctgagt
     1021 ttaaaaaaaa gtacaaattg cttctgaggc actatttgcc ctaaaatata atgggctttt
     1081 gttttgagac tgggtttcat tctgtagccc aggctagccc tgaacttgtt acagtgtcct
     1141 ttttttctca gcttcaggat tatggacata gatctccaca cctggcttgt aactattttg
     1201 aggctgaaag agctaatgaa gggccctgcc tagatccaga ctttctgaca tcaaattagg
     1261 gaagtggagg aaattatttg gaatgtgatc taagtttttg ttttttttta atgtgtcaac
     1321 ttgggctcag gctgtagttg tgttgcgtgc ctgcttagca tatacaaggg cctgggactg
     1381 ggccccagta tggaagaaag acttaacctg tgggaaaaac aattatcttt ttaaatagag
     1441 agctatgtat ttttcatgta atctgtgatt tcaagaagat gattggagta taaggattat
     1501 cattttgtta ggtagagttt ctttttttct ttttgtaatc atgagttccc ttgactcccc
     1561 tcttgatttt ctatcttgat ttatcctgca ggcatgtcct accttttgac attgtgactt
     1621 ggctttgtta aaaacttgca aaaaaaatca tgttttaaat gttatgattt tgtgttaggc
     1681 tgaatttata gctgtccttg acctcgggtt ggacacacct gcaacatgaa tagtaagacc
     1741 taataattcc tggcttaaag aaactgaagg aattactctt ttagagaaaa acactggaaa
     1801 ttttgctaac acaatactta aaagtatata gttggtggtt aagcttatga gatgagtgaa
     1861 tggaaaacct gggagaggaa agggtggaca gaattcaagt ctgcttctgt cccagccaca
     1921 tccacttgtc aataaaggcc ttctgtacct gactttgggc aacaggtatc aaaagcctca
     1981 agagaacagt ttctctgata agattatttt ataccagggg tcagaagact ccactcacgg
     2041 gccaagtttg gcccagtcat ttttgtatgg ggaaaaaact aaaaaggttt tttacatttt
     2101 taaaaggaag acattcgtga ctgagaccat acgtggccta taaacctagc atttggagaa
     2161 agtttgctga cttttgtaac attggctgcc tttgtgcaga agaaaaaaac atggtaggga
     2221 aggagctctg ctgcctcttt gccctacaac catggcattg caaaaataac cacctttttc
     2281 tttttttaaa taaactttat ttaagtc
//
