LOCUS       NM_177779               1353 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 42 (Ccdc42), mRNA.
ACCESSION   NM_177779
VERSION     NM_177779.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1353)
  AUTHORS   Ma,Y., Wu,B., Chen,Y., Ma,S., Wang,L., Han,T., Lin,X., Yang,F.,
            Liu,C., Zhao,J. and Li,W.
  TITLE     CCDC146 is required for sperm flagellum biogenesis and male
            fertility in mice
  JOURNAL   Cell Mol Life Sci 81 (1), 1 (2023)
   PUBMED   38038747
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1353)
  AUTHORS   Zhang,R., Wu,B., Liu,C., Zhang,Z., Wang,X., Wang,L., Xiao,S.,
            Chen,Y., Wei,H., Jiang,H., Gao,F., Yuan,L. and Li,W.
  TITLE     CCDC38 is required for sperm flagellum biogenesis and male
            fertility in mice
  JOURNAL   Development 149 (11) (2022)
   PUBMED   35587122
REFERENCE   3  (bases 1 to 1353)
  AUTHORS   Wu,B., Yu,X., Liu,C., Wang,L., Huang,T., Lu,G., Chen,Z.J., Li,W.
            and Liu,H.
  TITLE     Essential Role of CFAP53 in Sperm Flagellum Biogenesis
  JOURNAL   Front Cell Dev Biol 9, 676910 (2021)
   PUBMED   34124066
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1353)
  AUTHORS   Tapia Contreras,C. and Hoyer-Fender,S.
  TITLE     CCDC42 Localizes to Manchette, HTCA and Tail and Interacts With
            ODF1 and ODF2 in the Formation of the Male Germ Cell Cytoskeleton
  JOURNAL   Front Cell Dev Biol 7, 151 (2019)
   PUBMED   31475146
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1353)
  AUTHORS   Pasek,R.C., Malarkey,E., Berbari,N.F., Sharma,N., Kesterson,R.A.,
            Tres,L.L., Kierszenbaum,A.L. and Yoder,B.K.
  TITLE     Coiled-coil domain containing 42 (Ccdc42) is necessary for proper
            sperm development and male fertility in the mouse
  JOURNAL   Dev Biol 412 (2), 208-218 (2016)
   PUBMED   26945718
  REMARK    GeneRIF: Data indicate that mutations in the gene Coiled-coil
            domain containing 42 (Ccdc42) is associated with malformation of
            the sperm flagella.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX001016.4, AK079909.1 and AL645644.8.
            
            On Jan 9, 2008 this sequence version replaced NM_177779.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384,
                              SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-261               BX001016.4         3845-4105
            262-367             BX001016.4         4445-4550
            368-472             BX001016.4         4985-5089
            473-670             BX001016.4         7684-7881
            671-1284            AK079909.1         100-713
            1285-1353           AL645644.8         7715-7783
FEATURES             Location/Qualifiers
     source          1..1353
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 41.85 cM"
     gene            1..1353
                     /gene="Ccdc42"
                     /gene_synonym="A530001H01Rik"
                     /note="coiled-coil domain containing 42"
                     /db_xref="GeneID:276920"
                     /db_xref="MGI:MGI:3045254"
     exon            1..261
                     /gene="Ccdc42"
                     /gene_synonym="A530001H01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             179..1129
                     /gene="Ccdc42"
                     /gene_synonym="A530001H01Rik"
                     /note="coiled-coil domain-containing protein 42A"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 42"
                     /protein_id="NP_808447.2"
                     /db_xref="CCDS:CCDS24868.2"
                     /db_xref="GeneID:276920"
                     /db_xref="MGI:MGI:3045254"
                     /translation="MSLGMMEEEDLAEYFRLQYGERLLQLLQKFPNVEEQSDSPSIQL
                     LEKKKEAKIMQEAMEHKKEAFQRRMETLNLRWEELGIKEEQLKAHIQKFEQFIQENDQ
                     KRIRALKKANKERELKRLRLRELAKAKQEMMALRLEHQKLSVKLQDYAIFNKYLEKVV
                     ENSEFEEIHEVIARYKTLVSMHHDLMQSAQEGQEKIERAKARLARYMEEKDDEILQHN
                     NELARLQMRFDRARSDVIFWESRWAHIQNTAAKKTLLLGTIKMATLNLFQIVSKQLKE
                     STQVSLEDTHKQLDMIQQFIQDLSDIWTEVKKKEQQQVRM"
     exon            262..367
                     /gene="Ccdc42"
                     /gene_synonym="A530001H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            368..472
                     /gene="Ccdc42"
                     /gene_synonym="A530001H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            473..670
                     /gene="Ccdc42"
                     /gene_synonym="A530001H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            671..892
                     /gene="Ccdc42"
                     /gene_synonym="A530001H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1051
                     /gene="Ccdc42"
                     /gene_synonym="A530001H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1052..1353
                     /gene="Ccdc42"
                     /gene_synonym="A530001H01Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagcctctag ctggtttctg ctgtgtctct cagctaccca ctctctgtgg gactttgaaa
       61 gcagcaggag gagaggagac cgagaatcca gccactaacc cctgagtgcc ctgtggcact
      121 gtcactcacc atttcacttt gaaaagtagg ccaccggggc tgttaggtag ctgccaccat
      181 gagtttgggc atgatggaag aggaggactt ggccgaatac ttccggctac agtatgggga
      241 gcggctgctt caactgctgc agaagttccc aaatgttgag gagcagtcag actccccatc
      301 tatccagctc ctggagaaga agaaagaggc caagatcatg caggaggcca tggaacataa
      361 gaaggaggca ttccaacgga gaatggaaac gctgaacttg cgctgggaag aactaggtat
      421 taaggaagag cagctgaagg cccatatcca gaagttcgag caattcatcc aggagaacga
      481 ccagaaacgg atccgagccc taaaaaaagc caacaaggag cgtgaactga agcgactgcg
      541 cctgcgggag ctggccaagg ccaagcagga gatgatggcg ctgaggctgg aacaccagaa
      601 gctgagtgtc aagctgcaag actacgccat cttcaacaag tacctggaga aggtggtgga
      661 gaactctgag tttgaagaga tccacgaggt gattgcccgc tacaagaccc tggtgagcat
      721 gcaccatgac ctcatgcagt cggctcaaga aggccaggag aagattgaac gtgccaaggc
      781 gcggctggcc cgctacatgg aggagaagga cgatgagatt cttcagcaca acaacgagct
      841 ggcccgcctg cagatgcgct tcgaccgggc ccgcagtgat gtcatctttt gggaatctcg
      901 ctgggcacac atccaaaaca cggcggccaa gaagaccctc ctgcttggca ccattaagat
      961 ggcgacgctg aacctcttcc agatcgtgag caagcaactg aaggaatcca cccaagtgtc
     1021 cctggaggac acacacaaac aactagacat gatccagcag tttatacaag acctgtcaga
     1081 catctggaca gaagtaaaga agaaagaaca acagcaagtc cggatgtaag gaagtaacat
     1141 gcttctagaa tgttccaaga cacttgagag aaaagaccta ggaaagagaa ggttcctggt
     1201 gagcctgtgg tctagtcccc ctagtccagc tgttgaagac caactgcttc ctgatgatga
     1261 accacctccc tacctccccc cccccgcccc ccgttggctt tcccctccag cctcagtttg
     1321 tcccatccct aaaaacatta aatgttataa gaa
//
