LOCUS       NM_175488               3655 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 38 (Ccdc38), transcript
            variant 1, mRNA.
ACCESSION   NM_175488
VERSION     NM_175488.6
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3655)
  AUTHORS   Wang,Y., Huang,X., Sun,G., Chen,J., Wu,B., Luo,J., Tang,S., Dai,P.,
            Zhang,F., Li,J. and Wang,L.
  TITLE     Coiled-coil domain-containing 38 is required for acrosome
            biogenesis and fibrous sheath assembly in mice
  JOURNAL   J Genet Genomics 51 (4), 407-418 (2024)
   PUBMED   37709195
  REMARK    GeneRIF: Coiled-coil domain-containing 38 is required for acrosome
            biogenesis and fibrous sheath assembly in mice.
REFERENCE   2  (bases 1 to 3655)
  AUTHORS   Ma,Y., Wu,B., Chen,Y., Ma,S., Wang,L., Han,T., Lin,X., Yang,F.,
            Liu,C., Zhao,J. and Li,W.
  TITLE     CCDC146 is required for sperm flagellum biogenesis and male
            fertility in mice
  JOURNAL   Cell Mol Life Sci 81 (1), 1 (2023)
   PUBMED   38038747
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3655)
  AUTHORS   Zhang,R., Wu,B., Liu,C., Zhang,Z., Wang,X., Wang,L., Xiao,S.,
            Chen,Y., Wei,H., Jiang,H., Gao,F., Yuan,L. and Li,W.
  TITLE     CCDC38 is required for sperm flagellum biogenesis and male
            fertility in mice
  JOURNAL   Development 149 (11) (2022)
   PUBMED   35587122
  REMARK    GeneRIF: CCDC38 is required for sperm flagellum biogenesis and male
            fertility in mice.
REFERENCE   4  (bases 1 to 3655)
  AUTHORS   Lin,S.R., Li,Y.C., Luo,M.L., Guo,H., Wang,T.T., Chen,J.B., Ma,Q.,
            Gu,Y.L., Jiang,Z.M. and Gui,Y.T.
  TITLE     Identification and characteristics of the testes-specific gene,
            Ccdc38, in mice
  JOURNAL   Mol Med Rep 14 (2), 1290-1296 (2016)
   PUBMED   27278724
  REMARK    GeneRIF: these results suggest that Ccdc38 is a testes-specific
            gene, which may be important for mouse spermatogenesis.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124585.3.
            
            On Oct 19, 2007 this sequence version replaced NM_175488.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029803.1, AK030198.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-178               AC124585.3         182006-182183       c
            179-229             AC124585.3         177310-177360       c
            230-330             AC124585.3         173806-173906       c
            331-496             AC124585.3         172488-172653       c
            497-561             AC124585.3         167232-167296       c
            562-725             AC124585.3         159921-160084       c
            726-806             AC124585.3         159530-159610       c
            807-958             AC124585.3         156870-157021       c
            959-1051            AC124585.3         155059-155151       c
            1052-1109           AC124585.3         152882-152939       c
            1110-1182           AC124585.3         151896-151968       c
            1183-1334           AC124585.3         148653-148804       c
            1335-1470           AC124585.3         147407-147542       c
            1471-1676           AC124585.3         142848-143053       c
            1677-1770           AC124585.3         140989-141082       c
            1771-3655           AC124585.3         138489-140373       c
FEATURES             Location/Qualifiers
     source          1..3655
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 48.55 cM"
     gene            1..3655
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /note="coiled-coil domain containing 38"
                     /db_xref="GeneID:237465"
                     /db_xref="MGI:MGI:2444738"
     exon            1..178
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            179..229
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             193..1884
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     coiled-coil domain-containing protein 38"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 38 isoform
                     1"
                     /protein_id="NP_780697.2"
                     /db_xref="CCDS:CCDS24127.1"
                     /db_xref="GeneID:237465"
                     /db_xref="MGI:MGI:2444738"
                     /translation="MASQMHTSISSGDEGKDAVLKKERPYKIFFKDLFVFKENEIAAR
                     KKERMKNHSMKIYQKTTFSSRMKSRSHLGQLAFFADAGSSSYERLGLDPTLILRLTEG
                     ADRKRTVHEFINDQRDRFLLEYTVSTKKKTIKRFERLIAIKENQLKKAEKKLQDDALS
                     FEEFLRENDQRSVDALKMAAQETINKLQMTSELKKASMEVQSIKSDIAKTEFLLKEYM
                     KYGFFLLKLSPKQWQIQQSQKRAQSSKSNHILPKILEKFSINTAKGDNSIDSDKMSVS
                     EEWSSRRGSQGGRHGKHTLGQDSRKSSGFTRPESMASEDSLEYFLEDELVEFDLLPEI
                     YFKEPEELLQVFTELEEQNLTLVQYSQDVDENLEDVNKREKFIQDKINNNISFLLEHK
                     HMLRMNCEREEEKAAELELRSRLFSFGEFNSDAQEKLIDSLSKKINQVYRVCIGDAEV
                     GSLNAVQKLVKVESRLVELSDLIESIPREHVEAIERLKQKERRQKLREEKMKEKQRHQ
                     EERLKAALERAVAQPKKKLGRRLIYRSKPQSADKQELLLVSDTRSKSQDEEYFFS"
     exon            230..330
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            331..496
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            497..561
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            562..725
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            726..806
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            807..958
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            959..1051
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1052..1109
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..1182
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..1334
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1335..1470
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1471..1676
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1677..1770
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1771..3655
                     /gene="Ccdc38"
                     /gene_synonym="4933417K05Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgttcggtt ggccagatcg gcgcttgggc ctggtagtaa gcggttccca ggatgaaggg
       61 agcctggagc agggaaggat gaagctgaga cacagagtat cagtttggtg cctctgtctg
      121 ctttgtcccg accgccttct tgaaggatag gtctcaacag tgatccagac ttgttgagga
      181 ccaggagaca aaatggcatc ccagatgcac acatcaataa gttctggaga tgaaggaaaa
      241 gatgctgtac tcaaaaagga aagaccctac aagatttttt tcaaagatct cttcgttttc
      301 aaagaaaatg aaattgctgc caggaaaaag gagagaatga aaaaccacag catgaaaatc
      361 taccagaaga caacattttc gtcccgaatg aagagtcgct cacaccttgg ccagctagct
      421 tttttcgctg acgcaggcag ctcctcctat gaacgtctgg ggctagatcc cactcttatt
      481 ctcaggctga cagaaggtgc agacagaaag aggacggtcc acgagtttat taacgaccaa
      541 agagacagat ttctacttga gtatacagtg tcaaccaaga aaaagacaat caaaaggttt
      601 gaaagactca tagccattaa agaaaatcaa ctcaaaaaag ctgagaaaaa gctccaagat
      661 gacgcattgt cctttgaaga attcctacga gaaaatgacc agagatctgt agatgctctc
      721 aaaatggcag cacaagaaac aataaacaag ctccaaatga catcagagct caagaaagca
      781 agcatggaag ttcaatcaat aaagagtgat atagcaaaaa cagagttcct cctcaaggaa
      841 tacatgaaat atggattctt cctgctgaag ttgtccccaa aacaatggca aatacagcaa
      901 tcgcaaaaaa gggcccagtc gtccaaaagc aaccacattc ttccaaaaat cttggaaaaa
      961 ttctccataa atacagctaa aggagataac agcatcgact cagacaagat gtcagtttca
     1021 gaagaatgga gttcaaggcg aggaagccaa ggaggaagac acgggaaaca tactttgggc
     1081 caagactcta ggaagtcatc tgggttcact cgtcctgaaa gcatggcctc cgaggacagt
     1141 ttggagtact ttctagagga cgagctcgtg gagtttgatc tgctgccaga gatttatttc
     1201 aaggagccag aggagttgct gcaggtcttc acggagctgg aagagcagaa cctcaccttg
     1261 gttcagtatt cccaagatgt ggatgagaat ctcgaagatg tcaacaaaag agaaaaattt
     1321 atacaggata agataaacaa caacatctcc ttcctgctgg agcacaaaca tatgctcagg
     1381 atgaactgtg aacgagagga ggagaaggca gcagagctgg agctgaggtc caggctcttc
     1441 agttttggag aattcaattc cgatgctcag gaaaagctaa tagactctct tagtaaaaag
     1501 atcaatcaag tgtatagagt ctgcatcgga gatgctgagg ttggcagctt gaatgcagtt
     1561 caaaaactgg tcaaagtaga gtctcgcctg gtggagctga gcgacctcat tgaatctatt
     1621 cccagagaac acgtggaagc gatcgaaagg ctcaaacaga aggagcgacg gcaaaagctg
     1681 cgtgaagaga agatgaagga aaagcagaga caccaggagg agcggctaaa agctgctctg
     1741 gaaagagcag tggcacaacc caagaagaag ttgggaagac gacttatcta ccgttcgaaa
     1801 cctcaatctg cagacaaaca agagctcctt ttagtcagtg atacaagatc aaaatcacag
     1861 gacgaagagt acttttttag ttgaacggga tcacgaggat actttcttag cgaatgtttt
     1921 atgtggatgt tggctttcag tgatgcaata ctgccctagc aaattccagg gccgcagcag
     1981 acctttagct ggaagtttac aggactagga acagcaacta ttttctgctg caactctatt
     2041 gttcactagt acaggccatg agctaagcaa tacttacttt aggttgtccc tgttggagac
     2101 atgtatccaa agtcaattta ttgatgtaac aatagaatgg ccttcctcaa agcatgagaa
     2161 ttttaatatt ttctaaagca ataaggaagt ttacagcttt gaatatacat ttttaaaatg
     2221 tattattctt aaaacaactg gacaggttta aagcttaaaa actaatagac tacggtctca
     2281 gaacaatcat ggggctggtt ttctttcaca ttaagctctg aaaaccttat cagaaaactt
     2341 tcaagtgaac aaaatcatac atcttcagcc taaatatcaa tttgtattgt attttatctc
     2401 cataattatt tcaattttca tgttttgact tagctataat atacattatt tagtctatgt
     2461 caatatagaa ataatgattt attaatacaa tatatattaa tactaagaaa atgtttaact
     2521 ttatggatgt tacaagtggt ttggaaacct taaacaacac tgctgctttt atgaggtctc
     2581 agttaaacca gcggtgggat tacaaaaaaa aaaaaagagt cccttgaata aaactgagag
     2641 gcttttaaaa ctttagttct aagaattatc catccattgt ttcaacattt gcgctttgca
     2701 ttaaatagtc cacaagtcaa gttgaaaaaa aagaacccca aatctttatt gtatagaaat
     2761 acatatatat ataaaaaaaa aaatccaaga tgctattctc tcatttcccc atcttcctct
     2821 tcttcttcaa cgcctctgat gtagaggaca ttattacacc tgtaacagaa aacagtccat
     2881 tgtgagctgc actcagaacc cacacaagat caatcctcag tgccccatca tcagactgga
     2941 cactgaactc acagcttgcc acttgtcctg ttagtcctgt ataggtgtag taaagacaca
     3001 ccacacattt ttaccatcat cacacttcat ctctacgact tagaatgtag gtagttgctg
     3061 ataccagaca gtgagtacaa cagaaatcct tagcagccag actcaactaa aattcaaatt
     3121 taaatccctg taacccagga cactgataca ggttacagct ggagccagga gatgtaaatc
     3181 aagagtagga aaatctcaaa tataaactga aatcttccaa catgttagtg atttcacaag
     3241 cttctgagat ctagttgtag agtacttcct gtttaatgtt taataggact aatatatttc
     3301 agcaggtatt tctgaggtta gttagaactc ctttcataca cacaaataag tctgttacct
     3361 tattagaact tcgcccagat gtccagacag cgccccatct atgtactctt ctgtatttgc
     3421 aagctttaga caaaaagaaa ggtattagta tagctgcacg ggagggaaga gtgcagcatg
     3481 cctactcggt gaggacccag tgactgagac tcctccacac caacaactca cactggatcc
     3541 ataaacagta gctctaagat tatcttccca tcactcttgt agctttggat ttcatatatt
     3601 cattaagaca tgcatgggta tagaactcat ggataataaa gctcgtttca aagtt
//
