LOCUS       NM_144820               1191 bp    mRNA    linear   ROD 17-DEC-2024
DEFINITION  Mus musculus coiled-coil domain containing 28A (Ccdc28a),
            transcript variant 1, mRNA.
ACCESSION   NM_144820
VERSION     NM_144820.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Stojanovic,N., Hernandez,R.O., Ramirez,N.T., Martinez,O.M.E.,
            Hernandez,A.H. and Shibuya,H.
  TITLE     CCDC28A deficiency causes head-tail coupling defects and immotility
            in murine spermatozoa
  JOURNAL   Sci Rep 14 (1), 26808 (2024)
   PUBMED   39500989
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Zhou,H., Zhang,Z., Qu,R., Zhu,H., Luo,Y., Li,Q., Mu,J., Yu,R.,
            Zeng,Y., Chen,B., Sang,Q. and Wang,L.
  TITLE     CCDC28A deficiency causes sperm head defects, reduced sperm
            motility and male infertility in mice
  JOURNAL   Cell Mol Life Sci 81 (1), 174 (2024)
   PUBMED   38597936
  REMARK    GeneRIF: CCDC28A deficiency causes sperm head defects, reduced
            sperm motility and male infertility in mice.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1191)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   4  (bases 1 to 1191)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   5  (bases 1 to 1191)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK148447.1 and AW048156.1.
            
            On Mar 1, 2018 this sequence version replaced NM_144820.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC027759.1, AK148447.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849390, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1166              AK148447.1         2-1167
            1167-1191           AW048156.1         1-25                c
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 7.53 cM"
     gene            1..1191
                     /gene="Ccdc28a"
                     /gene_synonym="1700009P13Rik"
                     /note="coiled-coil domain containing 28A"
                     /db_xref="GeneID:215814"
                     /db_xref="MGI:MGI:2443508"
     exon            1..130
                     /gene="Ccdc28a"
                     /gene_synonym="1700009P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            131..330
                     /gene="Ccdc28a"
                     /gene_synonym="1700009P13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             173..727
                     /gene="Ccdc28a"
                     /gene_synonym="1700009P13Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 28A
                     isoform 1"
                     /protein_id="NP_659069.2"
                     /db_xref="CCDS:CCDS35852.1"
                     /db_xref="GeneID:215814"
                     /db_xref="MGI:MGI:2443508"
                     /translation="MEERKAKRKSPKSFSAHSTQVVNAKKNAIPSSKSTGFSNPTSQS
                     ASQRPKLKRVMKEKNKPPGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSG
                     KLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKAASDANLDRLLSDL
                     EELNSSIQKLHLADAQDVPNASSS"
     exon            331..494
                     /gene="Ccdc28a"
                     /gene_synonym="1700009P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            495..649
                     /gene="Ccdc28a"
                     /gene_synonym="1700009P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            650..672
                     /gene="Ccdc28a"
                     /gene_synonym="1700009P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            673..1175
                     /gene="Ccdc28a"
                     /gene_synonym="1700009P13Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1150..1155
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc28a"
                     /gene_synonym="1700009P13Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1175
                     /gene="Ccdc28a"
                     /gene_synonym="1700009P13Rik"
                     /note="major polyA site"
ORIGIN      
        1 aaagggcgct tgcctgggtt tgtgacccag gcagacgagc tgggctcttg atgcagccct
       61 ggcggaggct ttgaacgctc tcttactttt cctagccgag gaagggtaac cacagccttt
      121 tctccctccg gtcttatgaa gctggtgtta atgcaaccaa gaatttaaga caatggaaga
      181 gcgaaaagca aagaggaaga gtcccaagtc tttcagtgcc cactctactc aggttgttaa
      241 tgccaaaaaa aatgccatcc catctagtaa aagcacaggg ttttcaaatc ccacatcgca
      301 gtcagcttct cagaggccaa agttaaaaag ggtgatgaaa gaaaagaaca aacctcccgg
      361 aggagaaggg aagggggccc agtccacacc catccagcac tccttcctca ccgacgtctc
      421 ggatgtccag gagatggagc gcggcctcct cagcctgctg aacgatttcc actctggaaa
      481 gctgcaggcg tttggaaatg aatgttccat agagcagatg gagcatgtcc ggggaatgca
      541 ggagaaatta gctcgcttga atttggagct ctacggggag ttagaggaac ttcctgagga
      601 taagcggaaa gcagccagtg acgcaaacct ggacaggctt ctgtcggact tagaagaatt
      661 gaattcttct atacagaaac tgcacttggc agacgcacag gacgtcccca atgcgtccag
      721 cagctaaagc gatccgcagc ctccgttcct tcccagctga gtccagtagc aaaatcatct
      781 tccaccgcaa actccgagtc atgcgaatgc gcgtgcagtg atcctgctca cgcgccgctt
      841 tcgtccacgt gctcgctgta atccaccgct gtcggggagg cctcatcagg aagtggggta
      901 cagaggtgtg ctgctgtgct tgcttctgtt gccttaaggg ttatacttga aatgctttgt
      961 gctaaacctt cggtggggct gaaggatctg tccttgccgc caccacgctg acccagtgcc
     1021 tttgtggcgc acaggtgtcc tgtggtggcc cagcttctgt ttacgtcaga caatcggtac
     1081 acacgcaggt gtgtttccca atggccagtg acaaatgttg aataagtact tgtgagattt
     1141 gctattttta ataaagtgat tgttttaaat cgtcaaaaaa aaaaaaaaaa a
//
