LOCUS       NM_001033455            2084 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Mus musculus coiled-coil domain containing 27 (Ccdc27), mRNA.
ACCESSION   NM_001033455 XM_355541 XM_914742
VERSION     NM_001033455.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK133459.1.
            
            On Apr 5, 2007 this sequence version replaced NM_001033455.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK133459.1, BC150930.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2084              AK133459.1         2-2085
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 83.79 cM"
     gene            1..2084
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /note="coiled-coil domain containing 27"
                     /db_xref="GeneID:381580"
                     /db_xref="MGI:MGI:2685881"
     exon            1..263
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..1994
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 27"
                     /protein_id="NP_001028627.1"
                     /db_xref="CCDS:CCDS19008.1"
                     /db_xref="GeneID:381580"
                     /db_xref="MGI:MGI:2685881"
                     /translation="MKQENLTQECCSTSPKISKGLMVLQSIASRGCDTQDSEKKPQST
                     QQSLKKSSQAAAGYFYDKEDQIRKLSKHNGFLSEMEDMRKAFLMRPGCPQFSTRTTSM
                     SHVGSAIMVDLPRTCSGVWKLTEDHPLGRLGSASSVDGRVFPFSKSACELNYPRKRSE
                     PSDPSPTGSPTVVKKSQRTRTPWYISVIHEKDHSLLLMGEELQRFSEMESQMQKKDQE
                     ILTLQKEKEALKKQLKNLLRGKGTETSSASIKMDRSFETPLKLGRMSVLKTIYKEEDE
                     LQHWMQMQEEYSMAESSKELHVEPGSAIEEKSSEGPPEEAAAAKLSRPSQSKTETLLE
                     VGPEEEEEEEEEEVEGDEAKGTEEGEILVNEEEASWELREDEECHPKRSYSMTESFEE
                     ELMAQLEEYERMLMDFQRELEFTRSRYSLATGTITSLQRQTDFQESQLRKVTTENELL
                     EKELRERKQQIQDMTDKFSNLREEKKHQEIMGLIEKENLVLRQQVADLKMDLISSERT
                     IKELNTQTKELEDQVNTDKDHLRRWKDLHDDLQTRNEIIQQTEQQTRVVLEATQARYE
                     KLRNKIIQAVFSVSGNKNLSMELSDSYILESLQRIISERSDFYSQLKQKGVKVPPLQQ
                     SDVSLPSKIKKMASK"
     exon            264..390
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /inference="alignment:Splign:2.1.0"
     exon            391..492
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /inference="alignment:Splign:2.1.0"
     exon            493..647
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /inference="alignment:Splign:2.1.0"
     exon            648..827
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /inference="alignment:Splign:2.1.0"
     exon            828..920
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /inference="alignment:Splign:2.1.0"
     exon            921..1344
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /inference="alignment:Splign:2.1.0"
     exon            1345..1475
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /inference="alignment:Splign:2.1.0"
     exon            1476..1553
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /inference="alignment:Splign:2.1.0"
     exon            1554..1766
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /inference="alignment:Splign:2.1.0"
     exon            1767..1871
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /inference="alignment:Splign:2.1.0"
     exon            1872..2084
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2066..2071
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /note="hexamer: ATTAAA"
     polyA_site      2084
                     /gene="Ccdc27"
                     /gene_synonym="Gm1035"
                     /note="major polyA site"
ORIGIN      
        1 aagctaagac tgtcttccct tccgtaagcg aagccacgca caggttattc ggggactctg
       61 gttctgactc ctctatgaag caggagaact tgactcagga atgctgctcc acatccccca
      121 agatcagcaa gggcctgatg gtgcttcaga gcatagccag ccggggctgc gacacacagg
      181 actcagagaa gaaaccgcaa agtacccagc aaagcctcaa aaagtcaagc caggcggctg
      241 ccggatactt ctatgacaag gaggaccaga tcaggaaact cagcaaacac aacggctttt
      301 tgtctgaaat ggaagatatg agaaaagcct tcctcatgcg gcctgggtgt ccccagttta
      361 gtaccaggac aacatccatg tctcatgtgg gttctgccat tatggttgat cttccaagga
      421 cctgctctgg agtttggaag ttgactgagg accatcccct aggcaggctg ggctctgcca
      481 gcagtgtgga tgggagggtc tttccattca gcaagagtgc ttgtgagctc aactacccac
      541 ggaagaggag tgagccttca gacccgagtc ccaccggcag ccccactgtg gtcaagaagt
      601 cccagaggac cagaacgccc tggtatatct cagtcatcca tgagaaggat cactctctgc
      661 tcctgatggg agaagagctc cagcgtttct ccgagatgga gagccagatg cagaagaaag
      721 atcaggagat cctgacactc cagaaggaga aggaggccct gaagaagcag ctgaagaacc
      781 tgctcagagg caaaggcaca gaaacctctt cagcttccat caagatggac cggtcctttg
      841 agacgcccct gaagctgggg aggatgagtg tgctgaagac catctacaaa gaagaggatg
      901 agctacagca ctggatgcag atgcaggagg aatatagcat ggcggagagt agcaaggagc
      961 tgcacgtgga accaggaagc gccatagagg aaaagagctc tgaggggcca cccgaggagg
     1021 ctgcagctgc caaactgagc aggcccagcc agagcaagac tgagacgctg ctggaggtgg
     1081 gccccgagga ggaggaggag gaggaagagg aggaggtgga gggtgatgaa gcaaaaggaa
     1141 ctgaggaggg agagatattg gtgaatgagg aagaggcatc gtgggagctt cgggaggacg
     1201 aggaatgtca ccccaagagg tcctactcca tgacggagtc ctttgaggag gagctgatgg
     1261 ctcagctgga ggagtatgaa cggatgttga tggacttcca gagagagctg gaattcacta
     1321 ggtccagata ttccctggcc acagggacca tcacatcttt gcagcggcaa actgacttcc
     1381 aagagtctca gctgcggaag gtcaccacgg agaacgagct gctggagaag gagctccggg
     1441 aacggaagca gcagatacaa gacatgacag acaagttctc caacctccgg gaggaaaaga
     1501 agcatcagga gataatggga ctcattgaga aggaaaacct ggtcctccga cagcaagttg
     1561 cagacttgaa gatggatctc atcagcagtg agcggactat taaagagctg aacacccaaa
     1621 ccaaagagct ggaagatcag gttaacaccg acaaggacca cctgaggcgg tggaaggatt
     1681 tgcatgacga cctacagaca cgtaacgaga tcatccaaca gacagagcaa cagactcgtg
     1741 tggtcctgga ggccacccag gccaggtatg agaagctaag gaataagatc atccaggctg
     1801 tcttcagtgt cagtgggaac aagaacttgt ccatggaact ctctgatagc tacatcctgg
     1861 aatccctgca gaggatcatc tcggagagga gtgacttcta cagtcagctg aagcaaaagg
     1921 gcgtgaaggt gcccccacta cagcagtcag atgtctccct gcctagcaag atcaagaaga
     1981 tggcatccaa gtgatacagc atgcccagct gagaccagga ccctgctggc aaagccagtc
     2041 tatgtggcta gttctgtgat agataattaa accttagagt tggc
//
