LOCUS       NM_001372545             814 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus coiled coil domain containing 200 (Ccdc200),
            transcript variant 1, mRNA.
ACCESSION   NM_001372545 XM_030246231
VERSION     NM_001372545.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 814)
  AUTHORS   Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM,
            Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming
            LG.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL590994.13.
            
            On Sep 4, 2019 this sequence version replaced XM_030246231.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.300135.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-171               AL590994.13        40592-40762         c
            172-523             AL590994.13        36879-37230         c
            524-573             AL590994.13        36416-36465         c
            574-814             AL590994.13        35240-35480         c
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 65.47 cM"
     gene            1..814
                     /gene="Ccdc200"
                     /gene_synonym="Gm11634"
                     /note="coiled coil domain containing 200"
                     /db_xref="GeneID:667306"
                     /db_xref="MGI:MGI:3650266"
     exon            1..171
                     /gene="Ccdc200"
                     /gene_synonym="Gm11634"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..600
                     /gene="Ccdc200"
                     /gene_synonym="Gm11634"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 200
                     isoform 1"
                     /protein_id="NP_001359474.1"
                     /db_xref="CCDS:CCDS88260.1"
                     /db_xref="GeneID:667306"
                     /db_xref="MGI:MGI:3650266"
                     /translation="MGSAYHWEARRRQMALERRKVLMAQQQQEQNAKKQEEKKQHFEK
                     TSQPHQDSKGPQQDSKGPQQDSKGPPPAQPEQQAQPQEKAQGQPQPPGPKSQKEQDPP
                     TQSIFKDGLQKDTQRQGPQTKPTGAQQDGQQSCRVCSKPPILPGRGITNDCQSSSSKY
                     SRLTSTNYIQQW"
     exon            172..523
                     /gene="Ccdc200"
                     /gene_synonym="Gm11634"
                     /inference="alignment:Splign:2.1.0"
     exon            524..573
                     /gene="Ccdc200"
                     /gene_synonym="Gm11634"
                     /inference="alignment:Splign:2.1.0"
     exon            574..814
                     /gene="Ccdc200"
                     /gene_synonym="Gm11634"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaagcgttt gggtgcagcg gcatcatttt gggctttgcc tgctctcaca ccctgctgga
       61 attttctttt accacaccat catgggtagt gcctaccact gggaggcccg gcgtcggcag
      121 atggcattgg aacggaggaa ggtgctgatg gcacagcagc aacaagagca gaatgcaaaa
      181 aagcaggaag agaagaaaca gcattttgag aaaacatctc agccacacca agattcaaaa
      241 ggaccccaac aggattcaaa aggaccccaa caggattcaa aagggccacc gcctgcacag
      301 ccagagcaac aagcacagcc acaggagaag gcacaaggac agccacagcc gcctgggcca
      361 aagtcacaaa aggagcaaga cccacctaca cagagcatct tcaaggatgg tctccaaaaa
      421 gacacccaaa ggcaaggacc ccagactaag ccaaccggag ctcaacaaga tggccagcaa
      481 tcctgtagag tgtgcagtaa accccccatc cttccaggcc gcggtatcac gaatgattgc
      541 cagtctagct cttctaaata ttcccgactc acgtcaacta attacatcca gcagtggtga
      601 tccagagacg gactccaaga cttgatgaaa gtgaataaaa acaaaaccca aaaatcaacc
      661 aaacaaaaaa cccaagcacc accaaacaaa caacaacaaa aaaaaccaaa ccagacagca
      721 accacacttt ctttccaccc agcaatcttt caaatccaaa aagccagttg catttggaaa
      781 ggaggctagc tggaattaaa atgtaattcc tgga
//
