LOCUS       NM_001374218            1043 bp    mRNA    linear   ROD 23-AUG-2023
DEFINITION  Mus musculus coiled-coil domain containing 196 (Ccdc196),
            transcript variant 1, mRNA.
ACCESSION   NM_001374218 XM_011244230
VERSION     NM_001374218.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1043)
  AUTHORS   Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM,
            Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming
            LG.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC148324.2.
            
            On Sep 13, 2019 this sequence version replaced XM_011244230.3.
            
            Transcript Variant: This variant (1) represents the protein-coding
            transcript.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189682.181890.1,
                                           SRR5189676.193582.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-165               AC148324.2         142576-142740
            166-318             AC148324.2         142842-142994
            319-415             AC148324.2         144169-144265
            416-493             AC148324.2         146487-146564
            494-577             AC148324.2         146742-146825
            578-637             AC148324.2         147307-147366
            638-779             AC148324.2         147759-147900
            780-838             AC148324.2         154002-154060
            839-1043            AC148324.2         154343-154547
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 35.51 cM"
     gene            1..1043
                     /gene="Ccdc196"
                     /gene_synonym="EG626215; Gm6657"
                     /note="coiled-coil domain containing 196"
                     /db_xref="GeneID:626215"
                     /db_xref="MGI:MGI:3645257"
     exon            1..165
                     /gene="Ccdc196"
                     /gene_synonym="EG626215; Gm6657"
                     /inference="alignment:Splign:2.1.0"
     CDS             119..901
                     /gene="Ccdc196"
                     /gene_synonym="EG626215; Gm6657"
                     /codon_start=1
                     /product="putative coiled-coil domain-containing protein
                     196"
                     /protein_id="NP_001361147.1"
                     /db_xref="GeneID:626215"
                     /db_xref="MGI:MGI:3645257"
                     /translation="MTSGTNSSESGLSSKKNSKIYDNYLKEMNEDLKLRKQELLEMLK
                     PLEDKNNLLLQKVMANLEEKQKSLQIMRQIMAGRGCDESSVMELATAPEERKQNLTFE
                     SEELRDQQRALLMKSKADMQDRKAQKSPLSLWKAKSEPETSDVDKVDDIRKEKQQMKI
                     KWVKYEEQPNILQNGFLDKVIELKIEALRNYQKTNDFKSSLYLQHNFETKQGALNLLR
                     PQGKMGATTMERATINRNEHDTRIPGSKNYVEQQGGTREKSV"
     exon            166..318
                     /gene="Ccdc196"
                     /gene_synonym="EG626215; Gm6657"
                     /inference="alignment:Splign:2.1.0"
     exon            319..415
                     /gene="Ccdc196"
                     /gene_synonym="EG626215; Gm6657"
                     /inference="alignment:Splign:2.1.0"
     exon            416..493
                     /gene="Ccdc196"
                     /gene_synonym="EG626215; Gm6657"
                     /inference="alignment:Splign:2.1.0"
     exon            494..577
                     /gene="Ccdc196"
                     /gene_synonym="EG626215; Gm6657"
                     /inference="alignment:Splign:2.1.0"
     exon            578..637
                     /gene="Ccdc196"
                     /gene_synonym="EG626215; Gm6657"
                     /inference="alignment:Splign:2.1.0"
     exon            638..779
                     /gene="Ccdc196"
                     /gene_synonym="EG626215; Gm6657"
                     /inference="alignment:Splign:2.1.0"
     exon            780..838
                     /gene="Ccdc196"
                     /gene_synonym="EG626215; Gm6657"
                     /inference="alignment:Splign:2.1.0"
     exon            839..1043
                     /gene="Ccdc196"
                     /gene_synonym="EG626215; Gm6657"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtctaatgc aacaggaact tcaagaacaa cagcccaaaa atgctatctt agctgcatgg
       61 agaaaggtgg ctcatatttt caagaaggct tctttattgt taggagtttc ccttcaaaat
      121 gacaagtggc acaaactctt cagaatctgg cttgtcctca aaaaaaaatt ctaaaatata
      181 tgacaactac ttgaaagaaa tgaatgagga tttaaagtta aggaagcagg agcttctaga
      241 gatgctgaaa cctctggaag ataagaacaa tctcttattg cagaaggtaa tggcgaactt
      301 ggaggaaaaa caaaagagtc tgcagataat gaggcagatc atggcaggga ggggttgtga
      361 cgaatcttca gtcatggagc ttgctacggc accagaggag aggaaacaga acctgacatt
      421 cgagtcagaa gagctccgtg atcaacagag agcattacta atgaagtcga aggcagacat
      481 gcaagacaga aaggctcaga aatccccctt atcactttgg aaggccaaga gtgagccaga
      541 gacatcagat gtggacaaag tggacgacat caggaaggaa aagcaacaga tgaaaataaa
      601 atgggtcaaa tatgaggaac aacccaacat ccttcagaat ggctttcttg acaaagtgat
      661 tgagctgaaa attgaagcct tgaggaacta ccagaagacc aatgacttta aatcatcact
      721 gtacctacaa cacaattttg agacaaagca aggagctttg aatcttctga ggcctcaagg
      781 taaaatgggt gctacaacta tggagagagc aacaatcaac agaaatgaac atgatacgag
      841 aatcccagga tcaaagaact acgtagaaca acaaggagga actagagaaa agtcagtatg
      901 atgatgtagg acagaggctc ttttttctga agtcaatgcc agatgaagct ctgaaggttt
      961 agaaggcttt ccctactttt gctttggaca tatttgaaga ctaggtacag cctttctgtt
     1021 cactaaaatc tctcaaacct tta
//
