LOCUS       NM_001370849            1836 bp    mRNA    linear   ROD 12-OCT-2024
DEFINITION  Mus musculus coiled-coil domain containing 194 (Ccdc194), mRNA.
ACCESSION   NM_001370849 XM_003945442
VERSION     NM_001370849.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC127416.7.
            
            On Jun 6, 2019 this sequence version replaced XM_003945442.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK141396.1, SRR11927932.2206418.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382, SAMN00849387
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-341               AC127416.7         187979-188319       c
            342-438             AC127416.7         185054-185150       c
            439-571             AC127416.7         184433-184565       c
            572-1836            AC127416.7         182712-183976       c
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8"
     gene            1..1836
                     /gene="Ccdc194"
                     /gene_synonym="C430049E01Rik"
                     /note="coiled-coil domain containing 194"
                     /db_xref="GeneID:619297"
                     /db_xref="MGI:MGI:3588239"
     exon            1..341
                     /gene="Ccdc194"
                     /gene_synonym="C430049E01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            342..438
                     /gene="Ccdc194"
                     /gene_synonym="C430049E01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            439..571
                     /gene="Ccdc194"
                     /gene_synonym="C430049E01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            572..1836
                     /gene="Ccdc194"
                     /gene_synonym="C430049E01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1816..1821
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc194"
                     /gene_synonym="C430049E01Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1836
                     /gene="Ccdc194"
                     /gene_synonym="C430049E01Rik"
                     /note="major polyA site"
ORIGIN      
        1 agagctacgg cgggatggca gagccaggtc cggagccggg gcgcgcatgg cgactgctgg
       61 ccctgtgcgg ggctgcggtg ttcctggcgg ccgccgcggc tggaggggcc ctggtggcct
      121 ggaatctggc ggcctcgacg gcccggagcc cccgttgtcc agaacctgag cagatgaatg
      181 ccacggtgcg gcccccagac tcggcacccg aggtcgaaga actgcggcga cggctggccg
      241 aagctgagca agcccaggag aacctggtct ggcagctgca gcgcgcagag ggcgacaaga
      301 gggagttgga ggctgcgctc aaggcctgca aagacagcca gagtcggctt cagacccaac
      361 taaaggccct gaagattgag atggaccagg ccaaagtcag aggcacgcag atggggctgg
      421 agaatggaat gctgacagaa gccttggtgc gctgggaggc gacagccact gagtccaagc
      481 aacagctgga agaggcactg caacgcgcag gcgcagcaga ggcagccggc gaggcttgtg
      541 ttagccgcga ggtggcgctg agggagcaca tttatgctct ggaagctgag cttggcaccc
      601 tgcggaaaga gtcgcgcctc cgaccccgct ctggatctag gaccaagcct agcatcagcc
      661 accgcccaaa gtctggatcc actaagggat gcaggaggcc acctcgagat ccccaatagg
      721 atccccatgg gagcctcggg ccaggatggt cagagtgttt tagaggcgtg gctcacaaca
      781 tccacgatca acttaacacc caagacttgc ctaggtggca gcacacagat acaaccaacc
      841 tctccacggg agcacccagt gctagatcat cacataggga aactgaggct catttactca
      901 ggccctgatg tccctggtaa tcaagacaca acatttatct catagttgat gctgggctca
      961 cccagttgga gcacgcagaa ctccaggtgg gatttcaaca gagaacagag gcacacgaaa
     1021 atgaggcttg caaattctaa gaagccttga ggatcagggg ctacatgaag atgcctggag
     1081 gagatggcca cgggacaaga aaaaacagtg taggaagggg acctggctgg gtcacacatc
     1141 ggggaaaggg ctctctctgg gactcaaaag aatcattgac aagtcaaaca atacctcacc
     1201 ctcccgtcta ctctcctcct ttctctctct ttccctttca actagtctcc ctctgatatc
     1261 acactagctt agccttggct gcccttgaag gtacacagca ccatgtcctc ctcaacaatc
     1321 tcgtgtttgc tttatttcac agtttgtgag ccttacaact catatttaac agggtttttc
     1381 tgagacatct tcctatgtag ctcgtgttgg cctgacaaac acctccctcc ctctgctgac
     1441 tttaggagca ctttaccaaa cttggctcag tttccccgtt tatgcacatt taatgtgact
     1501 tatccagaat ttctggatat tttccatcaa gatttactct tcatttgttt ctgagacagc
     1561 acatagcagg caggaccagt accacaaaca cctccagtct ctgacccatg aggactgagg
     1621 cttgggggaa gggagctgga gaagcagctt agcgactaag aaaacctgtt gttcttgcag
     1681 acacccgggg ttgctttcac aaccacatca caaacatggg aaactctggt cccaggggat
     1741 ccagcatcct cctctgagct actttggtac cacatacaga agtgtgcata tacatgcaag
     1801 aaatgagtat atacaaataa aaacatttta aacgtt
//
