LOCUS       NM_028481               4682 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus coiled-coil domain containing 18 (Ccdc18), mRNA.
ACCESSION   NM_028481 XM_144475
VERSION     NM_028481.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4682)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4682)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4682)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC082598.1.
            
            On Jan 24, 2005 this sequence version replaced XM_144475.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082598.1, AK016519.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4682
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 52.55 cM"
     gene            1..4682
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /note="coiled-coil domain containing 18"
                     /db_xref="GeneID:73254"
                     /db_xref="MGI:MGI:1922974"
     exon            1..85
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            86..228
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            229..400
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            401..559
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            560..666
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            667..795
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            796..892
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1014
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..1306
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            1307..1431
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            1432..1586
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            1587..1807
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            1808..1918
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            1919..2050
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            2051..2185
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            2186..2263
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            2264..2380
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            2381..2548
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            2549..2691
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            2692..2855
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            2856..3069
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            3070..3169
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            3170..3286
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            3287..3430
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            3431..3634
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            3635..3772
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            3773..3973
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            3974..4441
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     exon            4442..4659
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4588..4593
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /note="hexamer: AAGAAA"
     regulatory      4603..4608
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /note="hexamer: AATATA"
     regulatory      4620..4625
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /note="hexamer: AGTAAA"
     polyA_site      4621
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
     polyA_site      4627
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
                     /note="major polyA site"
     polyA_site      4659
                     /gene="Ccdc18"
                     /gene_synonym="1700021E15Rik; 4932411G06Rik; NY-SAR-41"
ORIGIN      
        1 cgagagtgtc ccaggcttcc gagcgcagag gaggctcgcg gtgcgccgtg gtctggggac
       61 gctaaccccg cctgcgatct gggtggaaat ggaatttatc tcatcagact actgtactaa
      121 agacaacgac aatgaggagg aaagtttgct tgcaaacgtt gcttcattaa gacatgaact
      181 caaaataaca gaatggagtt tgcacaattt aggggaagag ttatccagtg ttagtccaag
      241 tgaaaattct gagtatgtct gcagtccttc aagatctgaa aggcttattt tggaagaact
      301 cacccaacct agccacctgg gacgtttgat ttacccacct tataagaaag tttgtaaaac
      361 atctgatagt actgattatc aaaagaaatc aagagatcag gtgtcttttt catctgtttc
      421 tatggatcaa gaggttaaaa accttcgaga gaaacttcat aaacttaggc aacagaatgc
      481 ttgtttggtc acacagaatc attctttaat gactaaaata gaatctgtcc actttgaatt
      541 gacacaatca aaagcaaaaa ttgctatgct tgagtctgca caagagcagg cagccaacat
      601 tccaatctta gaagaacaga ttataaattt ggaagcagaa gtttcagctc aagataaagt
      661 tttgagagaa gcagaagata aattagagca gagtcagaaa atggtgattg aaaaggagca
      721 cagtttacaa gaggccaaag aagagtgtat aaaattgaag gtggacttac ttgaacagag
      781 taaacaagga aaaagagctg agcgacaaag gaatgaagcc ctctataatg cagaagagct
      841 gagtaaggcc ttccagctgt acaaagaaaa agtggctgaa aaactggaaa aggttcaaga
      901 tgaagaagaa atattagaga gaaatcttag taactgtgaa aaggaaaata aaaggcttca
      961 agaaaagtgt aatctgtata aaagtgaact tgaaattttg aaagagaaat tcagggagtt
     1021 aaaagaagaa cattacagtg gaaaagaaaa attaatgatt atggcaatga aaaactcaga
     1081 agtcatgtca cagttaacgg aatctagaca atgtattctg aagctagaga gggagttaga
     1141 ggacaaagat gaaatagtac gagaaaagtt ttccttatta aatgaaaatc gagaattgaa
     1201 ggttcgtgtt gcaacacaga atgaacgact agagttgtgt cagcaggaca ttgataattc
     1261 aagggtggaa ctgaagagtt tagaaaaact gataacccag ataccattaa aaagagaaat
     1321 agttggcttt aggtcatctc tttgtaagca ccagaggagt agtgtttctg acaaggagga
     1381 caaatgcatt ggctgctgtg aggcaaataa actcatgatt tctgaattga ggattaagct
     1441 tgcaataaga gaggctgaaa ttcaaaagct tcatgcaaat ctgactgtga accagctctc
     1501 tcaaaatgtt gctaatgata gtcaagaatg tggtaaagta aacacgttag aaacagaacc
     1561 ggtaaaatta ggaggtagtc aagtcgaaag tataaaggat ggagatcagc agactgtgaa
     1621 caagcagtat gaaagagaga agcagcgact tgctaccggg atagaagaac tgcgtgctaa
     1681 gctgacacag atagaagctg agaactctga cttgaaggtt aacatggcac acagaactag
     1741 tcagtttcag ctaattcaag aggaactact agagaaagct tcaaatgcta gcaaactaga
     1801 aaatgaaatg acaaagaagt gttctcaact tttaattcta gagaaacagc tagaagaaaa
     1861 aattattgca tattcttcta ttgctgcaaa aaatgcagaa cttgaacaag aacttatgga
     1921 gaaaaatgaa aaaataagaa gcctagaatc aaatatcaac acagaacatg agaaaatttg
     1981 ttttgctttt gaaaaagcaa agaaaattca tcttgaacag cataaggaaa tggaaaaaca
     2041 gattgagcaa ctcgaaactc aactggagaa aagagaccaa cagtttaaag aacaagaaaa
     2101 gactatgtcc attttgcagc aagatatact gtgtaaacag catcaccttg aatcactaga
     2161 tagactcttg acagaaagta aagtggaaat ggaaaaagaa aatatgaaga aagatgaagc
     2221 tttaaaagca ttgcagattc atgtatctga agaaacaatc aaggtcagac aactggattc
     2281 agcgttagaa atctgtaagg aagagcttgc tttgcatttg aatcaattgg aaagaaataa
     2341 ggaaaaattt gaaagacagc tgaagaagaa atctgaagag gtatattgtt tgcagaaaga
     2401 gctaaagata aagactcata atcttgaaga gacgagtgaa caaaatgcca tcctacagca
     2461 cactcttcag cagcagcagc agatgttaca gcaagagacc atgagaaatg gagagctaga
     2521 agatactcag agtaaacttg aaaaacaggt atcaaagcaa gaacaagagc ttcagaaaca
     2581 aagggaaagt tcaacagaaa agttgagaaa aatggaagag aaatatgaaa cagccatacg
     2641 tgaagtggat ttgaaaaggc aaaaaattat cgagctaact ggtactgcca ggcaagccaa
     2701 acttgagatg gatcagtaca aagaggagct gtctaaaatg gaaaaagaaa taattcattt
     2761 gaagcgagat ggggaaaata aatccatgca gctttctcag ttagatatgg ttttagatca
     2821 aacaaaaaca gaactagaaa agacaacaaa ttcagtgaag gagttagaaa ggttacaaca
     2881 ccacacagaa actgaattaa cagaaaccat gcagaaacgg gaagctctcg aaaacgaact
     2941 acagaatgct catggagaat tgaaaagtac cttaagacaa ctacaggaat tgagagatgt
     3001 attacaaaag gctcagttat cattagagga aaaatacact acaataaagg atctcactgc
     3061 tgaactgaga gaatgtaaga tggagattga agacaaaaaa caagaactta ttgaaatgga
     3121 tcaggcgctt aaggagagaa attgggagct aaagcaaaga gcagctcagg ttacacattt
     3181 ggatatgact attcgtgaac acagaggaga aatggagcaa aaaataatca aattggaggg
     3241 taccctggaa aaatcagaat tagaacttaa agaatgcaac aaacaggtag aaagcttaaa
     3301 tgaaaagttg caaaatgcca aagaacagct tcgagaaaag gagtttataa tgctccaaaa
     3361 tgaacaggag atatcacaac tgaaaaagga aatcgaaaga acacagcaaa ggatgaaaga
     3421 aatggaaagt gttataaaag aacaggaaga ctacattgct acccagtaca aggaggtcat
     3481 tgatttgggg caagaattga ggctaaccca ggagcaaatg cagaacactc attcagaact
     3541 ggtggaggct cgtcgccaag aagtccaagc acagagggaa atagaaaggc ttgctggtga
     3601 actggaggat ataaaacaac tctctaaaga gaaggaagct catggaaatc gtttggctga
     3661 agaactgggg gcttctcaag tacgtgaagc tcatttagaa gcaagaatgc aagcagaaat
     3721 aaagaaatta tcctcagaag tagactctct gaaagaagct tatcagatag agatgatttc
     3781 acatcaagag aaccatgcaa agtggaagct ttctgctgaa tctcagaaga cgtctgttca
     3841 acaactgaat gaacaactag agaaagcgaa acaagaattg gaagaagctc aggatactgt
     3901 gagcaatttg catcaacaag ttcaagacag gaatgaagtc attgaagctg caaatgaagc
     3961 attacttatt aaagaatcag aattaaccag attgcaagcc aaaatttctg gacatgaaaa
     4021 gacagaagac accaagtatc taccagctcc gtttacaact ctaacagaaa ttatacctga
     4081 tagtcaacat ccaaattttg ccaaacattc tcagatatca cttttcaaat gcagaaaact
     4141 acgtcggtct attagtgcca gtgacctgag tttcaaaagt catggtaatg acgatctctc
     4201 tgaagaattg ctacaggact taaaaaaaat gcaatttgag cagacttcag cgatagaaag
     4261 tggtcataaa gacctacctt taacccattc agagtcattt aaacctctcc cgtataacct
     4321 agaagatgat agttctgaaa gtaatgactt cagtactctt agtggaatgc tgagatacat
     4381 aaacaaagaa gtgagactgc tgaaaaaatc ttctctgcaa acagctactg gtttaagtca
     4441 gggaggaaaa ttgtaattaa aagaagatgt ctatgtcatg aaaaatggaa ttgttggtac
     4501 tgtgctgttt gttatgtgta tgtagtgaat actcattgaa gctgttattt tattattttt
     4561 aataaatttt tatattttaa tattttaaag aaacacttct aaaatataac tatatttgta
     4621 gtaaaaatta agtcaattta ttgattattt tggtgaaaaa aaaaaaaaaa aaaaaaaaaa
     4681 aa
//
