LOCUS       NM_001195601             388 bp    mRNA    linear   ROD 07-OCT-2024
DEFINITION  Mus musculus coiled-coil domain containing 179 (Ccdc179), mRNA.
ACCESSION   NM_001195601 NR_033466 XM_895470 XM_918780
VERSION     NM_001195601.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Mural,R.J., Adams,M.D., Myers,E.W., Smith,H.O., Miklos,G.L.,
            Wides,R., Halpern,A., Li,P.W., Sutton,G.G., Nadeau,J.,
            Salzberg,S.L., Holt,R.A., Kodira,C.D., Lu,F., Chen,L., Deng,Z.,
            Evangelista,C.C., Gan,W., Heiman,T.J., Li,J., Li,Z., Merkulov,G.V.,
            Milshina,N.V., Naik,A.K., Qi,R., Shue,B.C., Wang,A., Wang,J.,
            Wang,X., Yan,X., Ye,J., Yooseph,S., Zhao,Q., Zheng,L., Zhu,S.C.,
            Biddick,K., Bolanos,R., Delcher,A.L., Dew,I.M., Fasulo,D.,
            Flanigan,M.J., Huson,D.H., Kravitz,S.A., Miller,J.R., Mobarry,C.M.,
            Reinert,K., Remington,K.A., Zhang,Q., Zheng,X.H., Nusskern,D.R.,
            Lai,Z., Lei,Y., Zhong,W., Yao,A., Guan,P., Ji,R.R., Gu,Z.,
            Wang,Z.Y., Zhong,F., Xiao,C., Chiang,C.C., Yandell,M.,
            Wortman,J.R., Amanatides,P.G., Hladun,S.L., Pratts,E.C.,
            Johnson,J.E., Dodson,K.L., Woodford,K.J., Evans,C.A., Gropman,B.,
            Rusch,D.B., Venter,E., Wang,M., Smith,T.J., Houck,J.T.,
            Tompkins,D.E., Haynes,C., Jacob,D., Chin,S.H., Allen,D.R.,
            Dahlke,C.E., Sanders,R., Li,K., Liu,X., Levitsky,A.A.,
            Majoros,W.H., Chen,Q., Xia,A.C., Lopez,J.R., Donnelly,M.T.,
            Newman,M.H., Glodek,A., Kraft,C.L., Nodell,M., Ali,F., An,H.J.,
            Baldwin-Pitts,D., Beeson,K.Y., Cai,S., Carnes,M., Carver,A.,
            Caulk,P.M., Center,A., Chen,Y.H., Cheng,M.L., Coyne,M.D.,
            Crowder,M., Danaher,S., Davenport,L.B., Desilets,R., Dietz,S.M.,
            Doup,L., Dullaghan,P., Ferriera,S., Fosler,C.R., Gire,H.C.,
            Gluecksmann,A., Gocayne,J.D., Gray,J., Hart,B., Haynes,J.,
            Hoover,J., Howland,T., Ibegwam,C., Jalali,M., Johns,D., Kline,L.,
            Ma,D.S., MacCawley,S., Magoon,A., Mann,F., May,D., McIntosh,T.C.,
            Mehta,S., Moy,L., Moy,M.C., Murphy,B.J., Murphy,S.D., Nelson,K.A.,
            Nuri,Z., Parker,K.A., Prudhomme,A.C., Puri,V.N., Qureshi,H.,
            Raley,J.C., Reardon,M.S., Regier,M.A., Rogers,Y.H., Romblad,D.L.,
            Schutz,J., Scott,J.L., Scott,R., Sitter,C.D., Smallwood,M.,
            Sprague,A.C., Stewart,E., Strong,R.V., Suh,E., Sylvester,K.,
            Thomas,R., Tint,N.N., Tsonis,C., Wang,G., Wang,G., Williams,M.S.,
            Williams,S.M., Windsor,S.M., Wolfe,K., Wu,M.M., Zaveri,J.,
            Chaturvedi,K., Gabrielian,A.E., Ke,Z., Sun,J., Subramanian,G.,
            Venter,J.C., Pfannkoch,C.M., Barnstead,M. and Stephenson,L.D.
  TITLE     A comparison of whole-genome shotgun-derived mouse chromosome 16
            and the human genome
  JOURNAL   Science 296 (5573), 1661-1671 (2002)
   PUBMED   12040188
  REMARK    Erratum:[Science 2002 Aug 23;297(5585):1278]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK005994.1, AC122017.5 and AV042221.2.
            
            On Sep 22, 2010 this sequence version replaced NR_033466.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY706122.1, AK005994.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-241               AK005994.1         4-244
            242-242             AC122017.5         19792-19792         c
            243-381             AK005994.1         246-384
            382-388             AV042221.2         268-274
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 32.92 cM"
     gene            1..388
                     /gene="Ccdc179"
                     /gene_synonym="1700015G11Rik"
                     /note="coiled-coil domain containing 179"
                     /db_xref="GeneID:100503036"
                     /db_xref="MGI:MGI:1922779"
     exon            1..79
                     /gene="Ccdc179"
                     /gene_synonym="1700015G11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..238
                     /gene="Ccdc179"
                     /gene_synonym="1700015G11Rik"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 179"
                     /protein_id="NP_001182530.1"
                     /db_xref="CCDS:CCDS57552.1"
                     /db_xref="GeneID:100503036"
                     /db_xref="MGI:MGI:1922779"
                     /translation="MCLRVKDEEPAQVYPEGPRRHHPSDVSTRQSVEKRINYMQNLQK
                     EKRKLGKRFARPNPIPDTGILWT"
     exon            80..124
                     /gene="Ccdc179"
                     /gene_synonym="1700015G11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            125..229
                     /gene="Ccdc179"
                     /gene_synonym="1700015G11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            230..388
                     /gene="Ccdc179"
                     /gene_synonym="1700015G11Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      361..366
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc179"
                     /gene_synonym="1700015G11Rik"
                     /note="hexamer: AATAAA"
     polyA_site      385
                     /gene="Ccdc179"
                     /gene_synonym="1700015G11Rik"
                     /note="major polyA site"
ORIGIN      
        1 agtaggtgcc tagggcacct tagagctctg cagcatgtgc cttcgagtta aggatgagga
       61 gcctgcacaa gtctacccag aaggaccacg aaggcaccat ccttcagatg tttctaccag
      121 gcagtctgtg gaaaaacgta tcaattacat gcaaaaccta cagaaagaga agaggaaatt
      181 ggggaaaagg ttcgcaaggc ctaacccgat tccggataca ggcatcttgt ggacataagc
      241 ttggagtctt ctagaagaaa ccacgctcca gaccaaaata tgtgtggact tctgatactg
      301 gccaacagct catggcttaa cttcatctga aaaataaagg aatgtgtggc cattctgcaa
      361 aataaaaact gagcttgcag taacattc
//
