LOCUS       NM_028687               2630 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 175 (Ccdc175), mRNA.
ACCESSION   NM_028687 XM_916831 XM_982478
VERSION     NM_028687.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2630)
  AUTHORS   Skarnes,W.C., Rosen,B., West,A.P., Koutsourakis,M., Bushell,W.,
            Iyer,V., Mujica,A.O., Thomas,M., Harrow,J., Cox,T., Jackson,D.,
            Severin,J., Biggs,P., Fu,J., Nefedov,M., de Jong,P.J., Stewart,A.F.
            and Bradley,A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC110170.6 and CR974486.6.
            
            On or before Aug 26, 2009 this sequence version replaced
            XM_916831.3, XM_982478.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-203               AC110170.6         149865-150067       c
            204-289             AC110170.6         145803-145888       c
            290-401             AC110170.6         143565-143676       c
            402-537             AC110170.6         140094-140229       c
            538-766             AC110170.6         124789-125017       c
            767-889             AC110170.6         122461-122583       c
            890-999             AC110170.6         120605-120714       c
            1000-1081           AC110170.6         109804-109885       c
            1082-1218           AC110170.6         104935-105071       c
            1219-1329           AC110170.6         100999-101109       c
            1330-1401           CR974486.6         2955-3026
            1402-1537           CR974486.6         4873-5008
            1538-1669           CR974486.6         5688-5819
            1670-1808           CR974486.6         16071-16209
            1809-1888           CR974486.6         19756-19835
            1889-2041           CR974486.6         21773-21925
            2042-2144           CR974486.6         24916-25018
            2145-2188           CR974486.6         27397-27440
            2189-2372           CR974486.6         28107-28290
            2373-2501           CR974486.6         32038-32166
            2502-2630           CR974486.6         32674-32802
FEATURES             Location/Qualifiers
     source          1..2630
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 30.2 cM"
     gene            1..2630
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /note="coiled-coil domain containing 175"
                     /db_xref="GeneID:73936"
                     /db_xref="MGI:MGI:1921186"
     exon            1..203
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             47..2515
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 175"
                     /protein_id="NP_082963.1"
                     /db_xref="CCDS:CCDS49084.1"
                     /db_xref="GeneID:73936"
                     /db_xref="MGI:MGI:1921186"
                     /translation="MAIRSWTPEGFVNKKLVRPASVSTNLSLELCTFPTTLGSSVAAN
                     ALEQLFVVEKSLQGDYFTCSEEVKTFLKDITVAVKKLEEMRKNTVELLEIESMELSRL
                     YFLLETVPNSIHRELEECIADARKLNIIEISQIKRKIETMNNEVKFLTNKISELKSMN
                     EVLGAKQAELAKRHEQYVLLLNQTLEEKAAATIYINDTYTRMNFEREEIELQKQCMQE
                     TTQLIEKQKQDYLEKKEYLAIRIKETKQSCDDKRKETYYKKKELTRLQNKIIKMKQTV
                     TSGSVMISDQSIEINILHEAITIWKKKVEDMRRLCESLEEKLSFFVTQKQNLDTTSTE
                     KKNAFVNKIQKLGEKIYKLNTENEDLREKLSTLLKQYKATLKEEEAVSLKKQMLSEEH
                     QKQMMVITQKEAFLSQREHDIKFMENGFGVLNDLNRASREAYGRQIEVMAKNRQREIQ
                     RCVINQWRIFCTRKRHAHWLQKIKLSLKKIIIQIEIVEQKRFQLLEETKHRKKEINHF
                     VHLIETLKEQLAQDKKDYVKKEERLIEELGTYETLILNEIQINKVKEEELGETLPQLQ
                     VAEEDFREKNRMLRSLHSDVSAKKQDEKTMSNTIFRYRKDIIRCTDGTENMKREIKHL
                     RDLESEKTHKHFEILKNLENEIYVNDQKMALLILENQKLREYLAYLKKEINEYASKQV
                     VTVQHSGDLSWQLIVQHSHYSDLLSGFQIIIKELVGTGEDTMQEIKSLVAKLQYRDEK
                     IESISTWLVGGFERLRRLMEEDSPASLSKEDLQKLGKKQKNQEILRFSPSSHARRLTL
                     SRICKMLKKQSRSRKKKHRPRTII"
     exon            204..289
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            290..401
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            402..537
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            538..766
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            767..889
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            890..999
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1000..1081
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1082..1218
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1219..1329
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1330..1401
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1402..1537
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1538..1669
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1670..1808
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1809..1888
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1889..2041
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2042..2144
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2145..2188
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2189..2372
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2373..2501
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2502..2630
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2608..2613
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2629
                     /gene="Ccdc175"
                     /gene_synonym="4930403N07Rik"
                     /note="major polyA site"
ORIGIN      
        1 agtgttcctc tcacttcgcc tggtgctgac agcttcaaca aacaagatgg ccatacgctc
       61 ctggaccccc gaggggtttg tcaacaagaa gttggtgcgg ccagcctcgg tctccacaaa
      121 cctgtccctc gagctatgca ccttccccac aaccttgggc tcctcggtag cggccaatgc
      181 gctagagcag ctcttcgttg tagaaaaatc tctgcaaggg gactatttca catgcagtga
      241 agaagttaag acctttctta aggacattac tgtagctgtt aaaaaactgg aagaaatgcg
      301 gaaaaacacg gtggaactgc tggagattga aagcatggag ctgagccgac tttactttct
      361 gctggagact gtgcccaaca gcatacacag ggagctggaa gaatgtattg cagatgctcg
      421 caaactcaat atcattgaga taagtcaaat aaaaagaaag attgagacga tgaataatga
      481 agtaaaattt ctaaccaaca aaataagtga gctgaagagc atgaatgaag ttctgggtgc
      541 aaagcaagca gagctggcga agaggcatga acagtatgtc ctgctgctga accaaacctt
      601 ggaagagaaa gccgccgcca ctatttacat aaatgacact tataccagaa tgaactttga
      661 gagagaagaa atagaactcc aaaaacaatg tatgcaagag acaactcaat taatagaaaa
      721 acagaaacaa gattatttgg aaaagaaaga atatctggct atccgcatta aagagacaaa
      781 gcaatcctgt gacgataaga gaaaagagac atattataag aagaaagaat tgaccagatt
      841 acaaaataaa ataataaaaa tgaagcaaac agttacttcc ggctcagtga tgatttctga
      901 ccaaagtata gagataaaca tactacacga agcaataact atttggaaga aaaaggtaga
      961 agatatgagg agactgtgtg aaagtttgga ggaaaaactg tcattttttg tgactcaaaa
     1021 gcaaaatctg gatactacat ctactgagaa gaagaatgca ttcgtgaata aaatacagaa
     1081 gttgggtgaa aaaatataca aacttaatac agagaacgaa gatctccgag agaaactgag
     1141 cacactcctc aaacagtata aggctacctt gaaggaagag gaagctgtga gtctgaagaa
     1201 acagatgttg tcagaagaac atcagaaaca gatgatggtt attactcaga aagaagcctt
     1261 cctatcacaa agagaacatg acatcaaatt tatggaaaac ggatttggag tccttaatga
     1321 tcttaataga gcatcacggg aagcatatgg aagacaaata gaagtcatgg ctaaaaatcg
     1381 gcaaagagaa attcagagat gtgtcataaa tcagtggaga atattctgta cgagaaaaag
     1441 acacgcacat tggctacaga agataaagct gtccttgaaa aaaattataa ttcaaattga
     1501 gattgtagag caaaagcgat ttcaattgct tgaagagacg aagcatagaa agaaggagat
     1561 taatcatttt gtgcacctaa ttgaaacact taaggagcag ctagcgcaag acaagaagga
     1621 ctatgtcaaa aaagaagaaa ggttaatcga agaactaggc acctatgaga ctctaatctt
     1681 aaacgagatc cagattaaca aagtgaaaga agaggagcta ggtgaaaccc tcccacagct
     1741 tcaggtagca gaagaggact tcagagaaaa aaacaggatg ctcaggtccc tccacagtga
     1801 cgtttcagca aagaagcaag acgagaaaac gatgagcaac accattttcc gctatagaaa
     1861 ggacatcatc agatgtacag acggcacgga aaatatgaag cgagaaataa aacacttacg
     1921 agaccttgaa agtgagaaaa cccacaaaca ttttgaaatt ctaaagaact tagaaaatga
     1981 aatctatgta aatgaccaaa agatggccct tctcatcctg gaaaatcaaa aattaagaga
     2041 ataccttgcc tacctgaaga aagaaatcaa tgaatacgcg tcaaagcaag tagtgactgt
     2101 acagcactca ggtgacctct cttggcaact gatagttcag cactcacact attcagatct
     2161 gctgtcagga tttcagatca taattaagga actggtgggc accggagaag acactatgca
     2221 agaaattaag tctctggtgg cgaagctgca gtacagggat gagaaaattg agtccatcag
     2281 cacctggctc gtggggggat tcgaaaggct gcgtcgtctt atggaagagg actcaccggc
     2341 cagccttagt aaagaggatc tccagaagct cggaaagaag caaaagaatc aagaaatact
     2401 tcgtttttcc ccatcctctc atgctaggag actcacatta agcaggatct gcaaaatgtt
     2461 aaagaaacaa tcaagaagcc ggaagaagaa gcacaggcca cgaacaataa tctgaacatg
     2521 tcttcaacca aactgtctct aaacagaaag ttcgttatat aaattatgct ttatttttga
     2581 aatattacta aacactgtat tggtgaaaat aaatagccat tgacaaagac
//
