LOCUS       NM_001037916            2003 bp    mRNA    linear   ROD 05-AUG-2024
DEFINITION  Mus musculus coiled-coil domain containing 17 (Ccdc17), mRNA.
ACCESSION   NM_001037916 XM_890074 XM_898796 XM_898810 XM_898821 XM_898826
VERSION     NM_001037916.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
            Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
            Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
            Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
            Fujiwake,S., Inoue,K. and Togawa,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   3  (bases 1 to 2003)
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   4  (bases 1 to 2003)
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
REFERENCE   5  (bases 1 to 2003)
  AUTHORS   Bonaldo,M.F., Lennon,G. and Soares,M.B.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL669953.7.
            
            On May 2, 2007 this sequence version replaced NM_001037916.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029257.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-228               AL669953.7         150386-150613
            229-297             AL669953.7         150689-150757
            298-403             AL669953.7         150919-151024
            404-566             AL669953.7         151094-151256
            567-650             AL669953.7         151336-151419
            651-769             AL669953.7         151499-151617
            770-883             AL669953.7         151830-151943
            884-1011            AL669953.7         152156-152283
            1012-1106           AL669953.7         152387-152481
            1107-1310           AL669953.7         152617-152820
            1311-1512           AL669953.7         152945-153146
            1513-1623           AL669953.7         153213-153323
            1624-2003           AL669953.7         153543-153922
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 53.24 cM"
     gene            1..2003
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /note="coiled-coil domain containing 17"
                     /db_xref="GeneID:622665"
                     /db_xref="MGI:MGI:1915667"
     exon            1..228
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..1755
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 17"
                     /protein_id="NP_001033005.1"
                     /db_xref="CCDS:CCDS18512.1"
                     /db_xref="GeneID:622665"
                     /db_xref="MGI:MGI:1915667"
                     /translation="MADYSGESGLLSCESCDMVFRSWALLATHTKRFCIGRLTPEVTL
                     KSQPSVAIKRGTKIMAQEKSRDQEASTSALKRLTEETAGSPGERLRVLQGTRARRMAE
                     TEAQSRALERRGEELKRRLHSVAGPKGGLPRPFDLERELRELKEEANRTRGALQTLGA
                     HFQALQLQPRKLQDTHRAVEFCYLPLRFNPETLAAEIRILREAYVHGGGRDPEVLDKI
                     LQLQVEASALELQRSQNRKEKLSAASEEVLTVEAENRLLEAEILALQKQKVLSLSPWG
                     SRDLPGHLSRCDNSLLPPLVAPPIPQLTSSTKAQNFHGTSKTILNGTMTRKMGLDLHF
                     LLPASDVLGPAPYDPGAGLVIFYDFLRGLDTSWIWVQLMTSLARNGQDTGGTTALPPA
                     LCLPQPSAPGPMGNCAILASKQPVPRLPPSPLVSLICELQAWHGVTWAPQPKAWASLL
                     LFDQDLRVLRGRWRLPLRVYPNTSLSLAQRNEIPQAGQAELFLRLVNARDTDAQTLAE
                     INPANAHEYQYPPMVSSSSVESSFFTHSSAFADPPPPTEEAFVSVKDKNEHLSPHQF"
     exon            229..297
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            298..403
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            404..566
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            567..650
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            651..769
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            770..883
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            884..1011
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1012..1106
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1107..1310
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1311..1512
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1513..1623
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1624..2003
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1897
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /note="major polyA site"
     regulatory      1939..1944
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      1966
                     /gene="Ccdc17"
                     /gene_synonym="1100001F07Rik"
                     /note="major polyA site"
ORIGIN      
        1 ttttctcttt tgtcacatcc tctgtaggac gctggtgtct ataagagatt ccattccatg
       61 gccgattact caggggaatc aggactttta tcctgtgaat cctgtgatat ggttttccgc
      121 tcctgggctc tgttggccac acacaccaaa cgattctgca ttggccggct gactccggag
      181 gtaacactta aatcacagcc ttcagtcgcg atcaaacgag gcaccaagat catggcacaa
      241 gaaaagagcc gtgatcagga agccagcaca tctgctctaa agaggctgac agaggagact
      301 gcagggagcc ctggggagag gctgcgagtc ttgcagggaa cccgcgccag acgcatggca
      361 gaaacagaag cacagagccg ggcgctggag cgtcgcggcg aagaattaaa acggcgcctc
      421 cacagcgtgg cgggacccaa gggaggatta ccccgcccat tcgacttgga gcgcgagctc
      481 agagaactca aggaagaggc caaccggacc cggggagcac tgcaaacgct aggtgcgcat
      541 ttccaggcgc tccagcttca gcctcgaaaa ctgcaggaca cccatagggc agtggaattc
      601 tgttacctgc ccctgcggtt caacccggaa acgctggctg cagagatccg gatcctacgt
      661 gaagcctacg tgcacggtgg aggccgggac ccagaagttc tggacaaaat attgcagctg
      721 caagtggaag cgtcagccct ggaattgcag cggtcgcaaa accgcaagga aaaactaagt
      781 gccgcctctg aggaggttct aacggtggaa gccgaaaaca ggctcctgga ggcagaaatc
      841 ctggcattgc agaagcagaa agtcctgagt ctgtcgccct ggggatccag ggatctcccc
      901 ggacacctga gtaggtgtga taactccctc ctccctccac tggttgcacc cccaatacca
      961 caacttacaa gttccacaaa agcccagaac ttccatggca cttcaaagac tatacttaat
     1021 ggaaccatga caagaaaaat gggtctggat ctccacttcc tcctacctgc atcagatgtt
     1081 ctaggtccag caccctatga tcctggggct ggccttgtca ttttctatga cttcctgcgg
     1141 ggccttgaca cttcttggat atgggtacag ctaatgacca gcttggcccg gaatggacaa
     1201 gatacaggag ggaccacagc attacctcca gccctttgct tgccacaacc ttcagctcct
     1261 ggacctatgg gcaactgtgc tatcctagca agcaagcagc ctgtgcccag gctgcctcca
     1321 tcaccactgg tatctttgat ctgtgaacta caggcctggc atggagttac atgggcacca
     1381 caaccaaagg cttgggcctc actattgcta tttgaccaag atctgagggt gcttaggggc
     1441 cgttggcgcc tcccacttcg ggtctatcct aacaccagcc tcagccttgc ccagaggaat
     1501 gagattcccc aggcaggcca ggctgagctc tttctgaggc tggtaaatgc aagagataca
     1561 gatgcccaga cattggcaga gatcaaccca gcaaatgccc atgaatacca gtacccacca
     1621 atggtgtcca gttcatctgt ggaatccagc ttcttcaccc acagttctgc ctttgctgac
     1681 cccccacctc ccacagaaga ggcttttgtc agcgttaagg ataaaaatga gcacttgagt
     1741 cctcaccagt tttgactgaa acactgaatt tcttctagac ctgcagcttt ttaaatgggg
     1801 tcttgtaaca gtggccaact acatttgatc ctaaaatact gtgtggcaaa aaagaactta
     1861 acccaaaccc acttttcttt aaactagcca actagaattt cttctgcatt tattttcctt
     1921 ttataaagca ggtccaggag taaatgtctt caaatattta gttaaactgg ctggcattca
     1981 acactttgaa aatggcttta cct
//
