LOCUS       NM_177203               2269 bp    mRNA    linear   ROD 31-MAY-2024
DEFINITION  Mus musculus coiled-coil domain containing 169 (Ccdc169),
            transcript variant 1, mRNA.
ACCESSION   NM_177203
VERSION     NM_177203.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2269)
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK076919.1, AK042903.1 and AI467609.1.
            
            On Feb 27, 2014 this sequence version replaced NM_177203.2.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (a).
            
            CCDS Note: The coding region has been updated to extend the
            N-terminus to one that is more supported by the available
            transcript and conservation data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-396               AK076919.1         1-396
            397-1941            AK042903.1         1020-2564
            1942-2269           AI467609.1         3-330               c
FEATURES             Location/Qualifiers
     source          1..2269
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 26.53 cM"
     gene            1..2269
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /note="coiled-coil domain containing 169"
                     /db_xref="GeneID:320604"
                     /db_xref="MGI:MGI:2444356"
     exon            1..135
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             53..697
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /note="isoform a is encoded by transcript variant 1;
                     coiled-coil domain-containing protein 169"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 169
                     isoform a"
                     /protein_id="NP_796177.2"
                     /db_xref="CCDS:CCDS17357.2"
                     /db_xref="GeneID:320604"
                     /db_xref="MGI:MGI:2444356"
                     /translation="MGEGHGDTFEGVSTDRLKLELLEEIHMKDVVQLSTLEIRHKIAE
                     LEANLNGDLAGSEWKTRYETQLELNDQLEKQIVSLKEKMEKMRGNPSDRLSSIRVYEK
                     MPVESLNVLLKQLEKEKRSLESQVKEYAFRLEQESKAYHRTNNERRSYIAEMTQVSGS
                     NQVSKRQQMDPLPRMKESPVKTGRHNSMNQKTTNAKKGPVKKVPRSNHLPKLNP"
     exon            136..215
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            216..326
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            327..367
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            368..466
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            467..520
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            521..597
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            598..2269
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      851..856
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /note="hexamer: CATAAA"
     polyA_site      891
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /note="major polyA site"
     regulatory      2234..2239
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2258
                     /gene="Ccdc169"
                     /gene_synonym="A730037C10Rik"
ORIGIN      
        1 ggtcttaagc tctaggtggt acacagggga aggtcgcgcg ggaggtcttg caatgggaga
       61 gggccacgga gacactttcg agggggtgag cacagaccgc ctgaagctgg agctgctgga
      121 ggaaatccac atgaaggatg ttgtgcagct ctccacactt gagatacggc acaagatagc
      181 agagctggag gccaacctca acggtgacct tgcaggcagt gagtggaaaa cccggtacga
      241 gacccagctg gagctgaatg accaattgga aaagcaaata gtgtctctga aagagaaaat
      301 ggaaaagatg cgtggaaacc cttcagatag actgtcttcc attcgtgtct atgagaagat
      361 gccagtggaa tctttaaacg tattacttaa acaactagaa aaagaaaaaa ggagtctcga
      421 aagccaagtg aaagaatatg cgtttagact ggagcaggag tcaaaggcat accacaggac
      481 caacaatgag cgccgttcct acatcgcgga aatgactcag gtttctggct caaatcaagt
      541 atccaagagg caacagatgg acccactgcc tagaatgaag gaaagtccgg tgaaaactgg
      601 aagacacaat tccatgaatc agaagacaac aaatgccaag aaaggaccag ttaaaaaggt
      661 tccaagatca aaccatcttc caaaactcaa cccgtgactc cagagctggg cagacttcta
      721 ttttttccat ctttttcgtc attcagtgtc ttcagtttag gaagctaatg ttcaatacat
      781 tcctcagggg aggaaataga tgagggagag cggcttctct cactctttca aaagttgatt
      841 cttctgcctg cataaaagtc atgggtctcc agcaacccta aatatccagt acatgtgctt
      901 atagttctta caatacctta gaagggaccc gaaggttgac atccttctgg cactctcagt
      961 agagtgtttc tgatattctc tgattgcact tttatgttgt atttggtttc taaattgacc
     1021 attagttaga actatatatt gttttatata ttatatataa tatctccacc tttttgttat
     1081 tttaaattgc atcatgctca gttcaacttt ctaaaatcaa ggtttcaaca tattcccaga
     1141 tcacatgcat atgaaagttt caggaaaata ttatcaataa cttcagccat gcactgcatt
     1201 gttcttgccc ccatcccccc cccccccgcc agtaaccttg aggatttagg gttatcctat
     1261 cacctcatgt ttatttccta catctagaaa aatggctgtg ctaaactgta taatttataa
     1321 aatttctaga aattcagtca caggggtctg ccactgtgta tgtggcatta aagtcatttt
     1381 gtgacattta ctaattcaca aaaatggtct agtttttgga ccaaactttg caggagtttg
     1441 gaatactgga gactagaagg aaatagaggg agaataagaa attgttttta ggacctatga
     1501 actttattga attttattca tgtttagggt gttttgtgac tcgaatgttt tttctaattg
     1561 tagtagagat caggaagatt catataactt acccatttaa atgagagaaa ttattggaat
     1621 ttaaatttct tgtgcatgtt aagcaagtgg tgttttaacc tatatctgat gaaaaaagtc
     1681 atttgtttcc ttttatatgt aatgtgcctt ttacacctga ggggtttatg tgtatgtatg
     1741 tatgtgtgta tgtatgtatg tatgtatgta tgtatgtatt atgcataata tgtacatgta
     1801 tgtgtagata atagaaccat aatgctgcac tcatgaactt gcagtagcta tggttgcctg
     1861 cacaaaacct gctcaagatc aagctagcca acattccagc tccagtggca gagggacaca
     1921 tgggcctcac ccctagctga gaagctggtg acagcaaggt ctgctaggag agggagagtc
     1981 cgtcctttta agggtgtggt ccctggtagg ttcagaatga tccagtagat ggccccacgg
     2041 ctatgtattt atggacagca ctaactggct tcaatggaat agatgtgtgt gtgaataaac
     2101 atatatatgg atgtatatgt gtgtatgtat acacacgtat ttaaagatat gctgttggga
     2161 aggggttatg ggatcttgga attggtgtgt gtatgaaata aatacattgt atacatgtgt
     2221 gaaattatcg aagaataaaa tattttaata aaatggaata ttgacatga
//
