LOCUS       NM_026782               1383 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 167 (Ccdc167),
            transcript variant 2, mRNA.
ACCESSION   NM_026782
VERSION     NM_026782.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1383)
  AUTHORS   Nishimura,M., Yokoi,N., Miki,T., Horikawa,Y., Yoshioka,H.,
            Takeda,J., Ohara,O. and Seino,S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY067347.1 and BC022730.1.
            
            On Jun 17, 2010 this sequence version replaced NM_026782.1.
            
            Transcript Variant: This variant (2) uses an alternate splice
            pattern in the 3' coding region and 3' UTR, compared to variant 1.
            The resulting isoform (2) has a shorter and distinct C-terminus,
            compared to isoform 1. Isoform 2 contains an in-frame start site
            twelve codons upstream from the currently annotated site, but Kozak
            sequence considerations and orthology data support use of the
            downstream AUG.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC022730.1, BG296305.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-23                BY067347.1         3-25
            24-1383             BC022730.1         1-1360
FEATURES             Location/Qualifiers
     source          1..1383
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 15.48 cM"
     gene            1..1383
                     /gene="Ccdc167"
                     /gene_synonym="1110021J02Rik"
                     /note="coiled-coil domain containing 167"
                     /db_xref="GeneID:68597"
                     /db_xref="MGI:MGI:1915847"
     exon            1..84
                     /gene="Ccdc167"
                     /gene_synonym="1110021J02Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             43..336
                     /gene="Ccdc167"
                     /gene_synonym="1110021J02Rik"
                     /note="isoform 2 is encoded by transcript variant 2;
                     transmembrane and coiled-coil domain-containing protein
                     C6orf129 homolog; coiled-coil domain-containing protein
                     167"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 167
                     isoform 2"
                     /protein_id="NP_081058.1"
                     /db_xref="CCDS:CCDS50051.1"
                     /db_xref="GeneID:68597"
                     /db_xref="MGI:MGI:1915847"
                     /translation="MTKKKRENLGVAQEIDGLEEKLSRCRKDLEAVTSQLYRAELSPE
                     DRRSLEKEKHTLMNKASKYEKELKLLRHENRKNTLLSVAIFTVFALLYAYWTM"
     exon            85..179
                     /gene="Ccdc167"
                     /gene_synonym="1110021J02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            180..232
                     /gene="Ccdc167"
                     /gene_synonym="1110021J02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            233..1370
                     /gene="Ccdc167"
                     /gene_synonym="1110021J02Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      398..403
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc167"
                     /gene_synonym="1110021J02Rik"
                     /note="hexamer: AATAAA"
     polyA_site      429
                     /gene="Ccdc167"
                     /gene_synonym="1110021J02Rik"
                     /note="major polyA site"
     regulatory      609..614
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc167"
                     /gene_synonym="1110021J02Rik"
                     /note="hexamer: AAGAAA"
     polyA_site      634
                     /gene="Ccdc167"
                     /gene_synonym="1110021J02Rik"
     regulatory      1346..1351
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc167"
                     /gene_synonym="1110021J02Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      1370
                     /gene="Ccdc167"
                     /gene_synonym="1110021J02Rik"
ORIGIN      
        1 gacttaatgg gctggtccag cgcggaaaag acagcaagca atatgactaa aaagaagcgg
       61 gagaatcttg gtgtcgctca ggagattgac gggctagagg aaaagctgtc ccggtgtcgg
      121 aaggacctgg aggccgtgac ctcccagctt tacagggcag agctcagtcc tgaggacagg
      181 aggtctctgg agaaggagaa acacaccctc atgaacaaag cctccaagta tgagaaagag
      241 ctaaagctgc ttcgacatga gaaccggaag aacacgctcc tctcggtggc catcttcact
      301 gtcttcgccc tgctctatgc ttactggact atgtgagtca gccatctcca gccactagaa
      361 ggacgtggta gtgcttcctt ctgcttagta gaggggcaat aaagagcccc aggctctgct
      421 gtctggcaac tatttcctgc tgacaaggtg agggtgagca agggaggcac tcttatttca
      481 aagatgaagg gatgttccaa aattcttatg tacaattcag gaggaaggga gatgtgcagc
      541 tgggagggca agctctgtgc ctgccacccg cagctccagc ctgccctggc ctgtgattat
      601 taccactgaa gaaaatgcag catgcacggg aaaaggtggc ctgggcttga agtggaggtt
      661 ccaggggtat gcggaatcat ctcctcttcc agagacaggc agggccaggg aggcctgcag
      721 gtgcccatgg ccagcaagtc tggcaatgac cagactgaca tggtgacaag agccagtgag
      781 tagggtgggg gtgagaagga ggaggtggtc agtcaggagc agcccctagg attctcccct
      841 agctccactc acagtagagg gccctaaggg agaaagaatg ctcactgctc cattcaggag
      901 cctgccaagt aaagccaggc tgtgaaacat gaagaatcgg ctggaggcag ctcaccaaca
      961 tgtgcgatgt tcaggtgaag gaattctcac ctggggctca tgcagaatgt ggcctcttgt
     1021 ggaggcggct agccagagtc agcagaagat cctttctcct gtctcgtcta gtgacagtaa
     1081 ttggtctgaa gcctctgcta tgttagtcac acagactgat cctggactgc cacagtgctg
     1141 ccatgccatg cagtgagttg tgtggtgagc tcattcaccc ccaagttctg ctttataccg
     1201 gaactgtact ttgataagcc tttgggctcc ctgtctagca gatggcagtc tcaggagctg
     1261 gagaagcttg gcttccacaa acactcccct tcctcagtta cacagcactg tggacaacag
     1321 cagcccagca cagagccaca tgagcagtaa aaatatgttt aatgatccaa aaaaaaaaaa
     1381 aaa
//
