LOCUS       NM_026714               2143 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus coiled-coil domain containing 163 (Ccdc163),
            transcript variant 2, mRNA.
ACCESSION   NM_026714
VERSION     NM_026714.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Pritsker M, Doniger TT, Kramer LC, Westcot SE and Lemischka IR.
  TITLE     Diversification of stem cell molecular repertoire by alternative
            splicing
  JOURNAL   Proc Natl Acad Sci U S A 102 (40), 14290-14295 (2005)
   PUBMED   16183747
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL683847.12, BY248144.1, CD741104.1 and BE950263.1.
            
            On Sep 29, 2017 this sequence version replaced NM_026714.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189676.27201.1,
                                           SRR11927936.168593.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3                 AL683847.12        3706-3708
            4-504               BY248144.1         1-501
            505-534             AL683847.12        4355-4384
            535-716             AL683847.12        4549-4730
            717-798             AL683847.12        4835-4916
            799-982             AL683847.12        5212-5395
            983-1050            AL683847.12        6422-6489
            1051-1346           CD741104.1         221-516             c
            1347-2123           AL683847.12        10013-10789
            2124-2143           BE950263.1         1-20                c
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 53.29 cM"
     gene            1..2143
                     /gene="Ccdc163"
                     /gene_synonym="0610037D15Rik; 4933430J04Rik"
                     /note="coiled-coil domain containing 163"
                     /db_xref="GeneID:68394"
                     /db_xref="MGI:MGI:1915644"
     exon            1..500
                     /gene="Ccdc163"
                     /gene_synonym="0610037D15Rik; 4933430J04Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             423..1403
                     /gene="Ccdc163"
                     /gene_synonym="0610037D15Rik; 4933430J04Rik"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="transmembrane protein CCDC163 isoform 2"
                     /protein_id="NP_080990.2"
                     /db_xref="CCDS:CCDS38853.1"
                     /db_xref="GeneID:68394"
                     /db_xref="MGI:MGI:1915644"
                     /translation="MNRSPSWSDQLHAVLSSTDENMARIKQSLYPFRVSSTGDLADTW
                     TSHRLPPQPEAQAQQPWALKTPTLGERLSCTEAHSSSLWDEVTKLRSQLQAQAQVTEA
                     LKHSVQSLLKDREQHMFKISALEASLKLLQEGPKGRALLEQCLEGLKKELQGLRSQVQ
                     ELVQNQMKARPGKLGPASGFHQELQSEHQVLWEESEILREELKLLRDQLSQHQELLLE
                     QIAKGPQVQARSWKKLEHLQSDQMDRVHTLEVSSTEAHDAQKEEPYLLSSEVSLPDCG
                     RSWELLKKLDRELQNNSLPNLEPSSSQFHAWSLGQEDLFLEGPTIFQSDL"
     exon            501..534
                     /gene="Ccdc163"
                     /gene_synonym="0610037D15Rik; 4933430J04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            535..716
                     /gene="Ccdc163"
                     /gene_synonym="0610037D15Rik; 4933430J04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            717..798
                     /gene="Ccdc163"
                     /gene_synonym="0610037D15Rik; 4933430J04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            799..982
                     /gene="Ccdc163"
                     /gene_synonym="0610037D15Rik; 4933430J04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            983..1050
                     /gene="Ccdc163"
                     /gene_synonym="0610037D15Rik; 4933430J04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1118
                     /gene="Ccdc163"
                     /gene_synonym="0610037D15Rik; 4933430J04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1119..1222
                     /gene="Ccdc163"
                     /gene_synonym="0610037D15Rik; 4933430J04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1223..1284
                     /gene="Ccdc163"
                     /gene_synonym="0610037D15Rik; 4933430J04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1285..2129
                     /gene="Ccdc163"
                     /gene_synonym="0610037D15Rik; 4933430J04Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctctattgcc tgtggtctcc gcaagaagcg gactcagttt cccgggtggc gctgcggcac
       61 cggtacttaa aatctcattc tccgcctacc agagtttgaa ctcttgagcg gcacttgtca
      121 cttgtctcag tggtgatagc gtccttgatt tgtggaggtc tcaaccaaaa ttcggttcat
      181 tctaccctct cgatattatt ctgttttctt cccccctccc cgacccccca cttttcaaag
      241 tactctgttc cgtagttcta gattcacagt attgctatcg cactgtttct gtagccctaa
      301 tatattccca ctttccttat ttccatctaa ctctgtggct tgtcctgggc tggcccgcgg
      361 gtatctgagt gtggaagagc aagaacaggg aaagttagag acgcaatttc aagtgctcca
      421 ggatgaacag gagccctagc tggtctgatc agcttcatgc ggttctcagt tcaactgatg
      481 aaaatatggc ccggattaag cagagtttgt atccctttcg agtttcctct acaggggacc
      541 tggctgacac ctggacttct catcgcttac ctcctcagcc agaggcccaa gctcaacagc
      601 cttgggctct aaagactccc actcttggag agagactgag ctgtactgaa gcccacagct
      661 cctctctctg ggatgaagtt actaaactcc gatcccagct tcaggctcag gctcaggtga
      721 ctgaggcgct gaagcattct gtacagagcc tgttgaagga tcgggagcaa catatgttca
      781 agatcagtgc tctagaagca tcactaaaac tgctgcagga gggccccaaa gggagagccc
      841 ttctggagca atgcctggaa gggctgaaaa aggaactgca gggccttcgg agtcaggttc
      901 aagagctagt ccaaaaccaa atgaaagcaa gaccaggaaa gttgggtcct gccagtggct
      961 ttcaccaaga gctgcagagt gagcaccagg ttttgtggga agagtcagaa attcttcggg
     1021 aggaactgaa gttgcttcga gaccagctga gccaacatca ggagttgttg ctggaacaaa
     1081 tagctaaagg gccccaggtt caggcccgca gctggaagaa gttggagcac ctgcagagtg
     1141 accagatgga cagggttcat accttggagg tttccagtac agaggcccat gatgcccaga
     1201 aggaagagcc ctacctcctc agctctgaag tcagtctccc agactgtggc cgtagctggg
     1261 aacttttaaa gaaattggat agggaactcc agaacaactc ccttcctaac ctggaaccca
     1321 gcagctctca gttccatgcc tggagtctag ggcaagagga cctgttcctt gagggcccca
     1381 cgatcttcca gagtgacctg taagaacttg tgagaaaaat gaggtgcagc ttctatccca
     1441 ggcagcctcc tcatcctctc cgttcatgcc ctctttaccg aggcatcgca ctgtgcagcc
     1501 agtccttctc cctggctaat tcaaaataaa gtagcttcat tctccctgat gtgttctctg
     1561 taaatcttgc cccacatggg ataggctggg ccataccttt ccttcttgtt acttacctgg
     1621 ttcctgtgac ccctgccttt gaaatctgac aatcataggt gcacctttga ctgagctcca
     1681 gtgaacttgg gaagaaatga tctcttgttt ggtgagtaga ataggttagg atgttgggag
     1741 tattgaggtg atcacaaagg agagtgtgat gttccggtgg gcactagatc cagtcagtca
     1801 cactgctggg aggcttaccc cagcttctcc ctacctcctc accctcagta gcccagtctg
     1861 tatgtctaca gttctgtttc tctgaaatcg agttgtcttc aaaacaaaca aacaaaagcc
     1921 aacaaaacca aaatctctat ttcttatttt gagaaaggat ctgtttaagt agccctggct
     1981 gttctgggaa caggctctcc ttgaactctc agggttctcc tgcctctgcc tccctagtcc
     2041 tggcatcaaa ggtgggcact gctacaccta gccaagaagt attttttgct ataaccttct
     2101 tgaggaaata aagagttcca tgattcaaaa aaaaaaaaaa aaa
//
