LOCUS       NM_001034059            1574 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus coiled-coil domain containing 160 (Ccdc160), mRNA.
ACCESSION   NM_001034059 XM_486677 XM_914134
VERSION     NM_001034059.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1574)
  AUTHORS   Cox,B.J., Vollmer,M., Tamplin,O., Lu,M., Biechele,S.,
            Gertsenstein,M., van Campenhout,C., Floss,T., Kuhn,R., Wurst,W.,
            Lickert,H. and Rossant,J.
  TITLE     Phenotypic annotation of the mouse X chromosome
  JOURNAL   Genome Res 20 (8), 1154-1164 (2010)
   PUBMED   20548051
REFERENCE   4  (bases 1 to 1574)
  AUTHORS   Osipovich,A.B., Singh,A. and Ruley,H.E.
  TITLE     Post-entrapment genome engineering: first exon size does not affect
            the expression of fusion transcripts generated by gene entrapment
  JOURNAL   Genome Res 15 (3), 428-435 (2005)
   PUBMED   15741512
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX936351.12.
            
            On Feb 4, 2022 this sequence version replaced NM_001034059.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK134708.1, SRR5189676.93308.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849378
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-158               BX936351.12        30161-30318
            159-1574            BX936351.12        37052-38467
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 29.19 cM"
     gene            1..1574
                     /gene="Ccdc160"
                     /gene_synonym="6330534C20Rik"
                     /note="coiled-coil domain containing 160"
                     /db_xref="GeneID:434778"
                     /db_xref="MGI:MGI:3588225"
     exon            1..158
                     /gene="Ccdc160"
                     /gene_synonym="6330534C20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            159..1574
                     /gene="Ccdc160"
                     /gene_synonym="6330534C20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             183..1154
                     /gene="Ccdc160"
                     /gene_synonym="6330534C20Rik"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 160"
                     /protein_id="NP_001029231.1"
                     /db_xref="CCDS:CCDS30126.1"
                     /db_xref="GeneID:434778"
                     /db_xref="MGI:MGI:3588225"
                     /translation="MDARRKHWKDNTFTPFLNEHDFQEAAAPPQPLSEQSSADNHKRM
                     GRVSNFSVRNTQEGNKFKRKDYSSQIAEGEQDSNLRERRMNVSKNDANTNSAFWDSLH
                     LDDATKESSHRRESASAWNKKKLPAATQVTRKKWTEAMPPKLRLHLLNEELGELSLKC
                     REIERDFENAEKELLNFRKEASVKAVNFQEPGTGASKKDRELQALKNDLSEKATNVKN
                     LTEELQQAKEVMYRLSLENRNLKDAVRKLKHQTELNTALLREEMKLFYELEMEKIRLE
                     LGAIKNELRVEKTLRVKNSRALEVLGRHVASVVRSSNPADHFTGNIF"
     regulatory      1541..1546
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc160"
                     /gene_synonym="6330534C20Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1574
                     /gene="Ccdc160"
                     /gene_synonym="6330534C20Rik"
                     /note="major polyA site"
ORIGIN      
        1 agtgcggccc gcgctggagc tgcactgcag aggctctgcc ccgggccagc ctggccgggt
       61 cgtggtggct agcactgaac aaggggctgc ctcctgtcgg tagtgaccgg cttcggggaa
      121 gagtggacag ggctctccaa ccgcacccgc gcttccagga aatcaaacag gtacccagga
      181 aaatggatgc tcgaagaaag cactggaaag acaatacgtt cactcctttt ttaaacgagc
      241 acgattttca ggaagctgct gctccacccc agcctctctc tgaacagtca tcagcagaca
      301 accacaagag gatggggaga gtgtctaact tctccgttag gaacactcaa gaaggaaata
      361 aattcaagag gaaagactat tcttcccaga tagcagaagg agaacaagat tcaaatttaa
      421 gagagagaag aatgaacgtg tcaaagaatg atgcaaatac caattctgcc ttctgggact
      481 ctcttcattt ggatgatgca acgaaggaaa gttcacacag aagggagagc gcctccgcgt
      541 ggaataagaa gaaattgccg gccgccacac aagtcaccag gaagaaatgg acagaagcaa
      601 tgcctccaaa actccgccta caccttctga acgaagagct gggagaactc agcctgaaat
      661 gccgggagat tgaacgggac tttgaaaacg ccgaaaaaga acttttgaac tttagaaagg
      721 aagcctccgt gaaagctgtc aattttcaag aaccagggac aggtgcttcc aagaaagacc
      781 gggaactgca agctttaaaa aacgacctgt ctgaaaaagc gacaaacgta aaaaacttaa
      841 ctgaagagct ccagcaagcc aaagaagtca tgtacaggtt gagcctagag aacaggaact
      901 tgaaagacgc tgtcaggaaa ctgaagcatc aaactgaact aaatactgcg ctcctcagag
      961 aagaaatgaa gttgttttac gagctggaga tggaaaagat ccgcttggag ctgggtgcca
     1021 tcaagaatga gctgagagtc gagaagaccc taagggtgaa gaacagcagg gctctggagg
     1081 tgcttggaag acacgttgct tcagtggtaa ggtcgtcaaa tcctgctgac cactttactg
     1141 ggaatatttt ttaaacttaa aaaacaaaaa gcctttcact gggaacgcta ttgagccaaa
     1201 tcaatattta tcgtactata tatatttgtg tactgctaaa atgtatttga aagcgtgtaa
     1261 tctttacttc tggtgaatca gagcacctac caattatgca gatgctgact tcaaagcagc
     1321 tgtttctctt tctgatgaag gcattgtgag actctgaatg agaagttcta aaatctcttt
     1381 tgtatgggat atatatatat atatatatat acacaaaaca accaaacaac ccaaactgat
     1441 tcactagatc gtagatgact gaatgagcag cactgtgtga ccttgttagc catgtccttg
     1501 gcacatcaat gttttcccat ctgtggtaat caatgtgaac aataaaaaat ctgtttacat
     1561 gtataagcat aaaa
//
