LOCUS       NM_001360018            3648 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 158 (Ccdc158),
            transcript variant 1, mRNA.
ACCESSION   NM_001360018 XM_011249478
VERSION     NM_001360018.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3648)
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 3648)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124560.4, BC137976.1 and AC123850.3.
            
            On Jan 25, 2018 this sequence version replaced XM_011249478.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (a).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC137976.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-31                AC124560.4         178382-178412
            32-3566             BC137976.1         1-3535
            3567-3648           AC123850.3         178308-178389       c
FEATURES             Location/Qualifiers
     source          1..3648
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 47.23 cM"
     gene            1..3648
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /note="coiled-coil domain containing 158"
                     /db_xref="GeneID:320696"
                     /db_xref="MGI:MGI:2444555"
     exon            1..70
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            71..114
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            115..251
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             185..3526
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /note="isoform a is encoded by transcript variant 1;
                     coiled-coil domain-containing protein 158"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 158
                     isoform a"
                     /protein_id="NP_001346947.1"
                     /db_xref="GeneID:320696"
                     /db_xref="MGI:MGI:2444555"
                     /translation="MESKACESKNEDLLPSGITSKGGSSSPFFVTSTHGTIIENTSST
                     GTLTQMPFFPKYEVELDSPRKSTPYPGKEHIERVLEEYSHQVKDLQRRLNESNELHEK
                     QKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEESRNQLQNTVRELEAAKCLK
                     EDMLKDSSTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTMHFRSLG
                     SAISKILRELDTEISFLKGRIFPVEDQLETLKSESQNKIELLLQQHQDRIEQLISEHE
                     VEITGLTEKASSARSQANSVQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRE
                     SKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKEL
                     SLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMA
                     AIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKE
                     RAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEIL
                     RQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEA
                     RVSDLELEKVKLVNAGSERLRAVKDIRHERDQLLNEVKTSRTELNHLSEDYEVLKRNF
                     RNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRG
                     QIDALQSKVQFLEEAVTSANKERHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQE
                     RRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNS
                     SVKPRLLQPASVTRSHSNIPSSQSTTSFLSHHSIKTNTPKEDPTRDLKQLLQELRTVI
                     NEEPAMALSKTEEDGRTPSLGALEDRVRDCITESSLRAELCHRSNNSLRESTEGSKSS
                     ETLSREPVPLHPGDLEDPSSCFTFTSTASPSGKMSASRSFSSSPKKSPVHSLLTSSAE
                     ESVNSTPQYRSTKPIHSPTSAKDSQSPSLETTGKTCQKLQNRLESLQTLVEDLQLKNQ
                     AMSSMIRNQEKRIQKVKDQEKMLLK"
     exon            252..469
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            470..579
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            580..907
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            908..984
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            985..1095
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1096..1210
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1211..1330
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1331..1528
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1529..2011
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2012..2201
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2202..2354
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2355..2467
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2468..2626
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2627..2719
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2720..2845
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2846..2994
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2995..3054
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3055..3114
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3115..3182
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3183..3341
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3342..3449
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3450..3648
                     /gene="Ccdc158"
                     /gene_synonym="4932413O14Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtctcgcag gtgcggccgc ggcccccgcg gacatgcggc cggtctctta gggctaggtg
       61 ttgttagcag gtgttaatag aagaaactga aaataagaat atccagaaat taagataaga
      121 actgaatgat cctaagaagc gctcacttct caagatctct aagaagaggt agggaatagt
      181 tcacatggaa tcaaaagctt gtgaatcaaa aaacgaagat cttttaccaa gtggcatcac
      241 atccaaagga ggttcttcaa gcccgttttt tgtaacgtct actcatggta caataattga
      301 aaacacatct tcaactggga ctttaacaca aatgcccttt tttcctaaat atgaagtgga
      361 acttgattct ccgagaaagt ccacccctta ccctggaaaa gagcatattg aacgtgtttt
      421 ggaagaatat tcacatcaag ttaaagattt gcagagaaga ctcaacgaaa gcaatgaatt
      481 acatgagaaa caaaaatttt acttaagaca gtcagtcatt gatttgcaaa caaaacttca
      541 agaaatgcaa atggagagag atgccatggc tgatatcaga cgaagggaga gtcagtccca
      601 ggaggagtca cgaaatcagc ttcagaatac agttcgtgaa cttgaagctg ccaagtgcct
      661 taaggaggat atgttgaaag acagcagcac acagatagag cagctacgaa aaatgatgct
      721 tagtcatgaa ggcgtgcttc aagaaatccg atcaatctta gttgactttg aagaagcctc
      781 aggcaagaaa atatgtgaac acgacagcat gtctaccatg cacttccgca gcctgggctc
      841 agctattagt aaaatcctaa gagaattaga cacagaaatc tcttttctta aagggaggat
      901 atttccagta gaggatcagc ttgaaaccct gaagtctgaa tcacagaaca aaatagaact
      961 attacttcaa caacatcaag atcggattga gcagctgatc agtgaacatg aagttgagat
     1021 aacaggactt acggagaaag ccagcagtgc tcgaagccaa gccaacagtg tccagagtca
     1081 gctggaaatc attcaagaac aggcaaggaa ccagaactcc atgtatatgc gccagctcag
     1141 tgacttagag tctactgttt ctcagctgcg ttctgaactg agggagtcca aaaggatgta
     1201 tgaagataag atagaagagc tggagaagca gttagtcctt gccaattcag agctcaccga
     1261 ggcgcgcaca gagcgggacc agttcagtca ggagtcagga aatctggacg accaactcca
     1321 aaagctcttg gcagatcttc acaagaggga gaaggaactg agtctggaga aggagcagaa
     1381 caagcgtctg tgggaccgag acacaggcaa cagcatcact atcgaccacc tgcggcgaga
     1441 gctggatgac agaaacatgg aggtgcagag gctggaggcc ctgctcaagg ccatgaagag
     1501 cgagtgtcag ggccagatgg agcggcagat ggcagccatt caggggaaga atgagagtct
     1561 ggagaaagtg tcctccctca ctgcacagct ggagtccacc aaggagatgc tgcgcaaggt
     1621 ggtggaagag ttgacagcca agaagatgaa ccttgagagc tctgagagga cggtgtctga
     1681 cctgacagct tccctccagg agaaggaacg cgccattgag gccaccaatg cagagatcac
     1741 gaagctccgc tcccgggtgg acttgaagtt gcaggagctt caacacctga agaatgaggg
     1801 cgatcacctc agaaacgtgc agacggaatg tgaggcgctc aaactccaga tggcggaaaa
     1861 ggacaaggtc attgagattc tgaggcagca gattgaaaac atgactcagc tggtaggcca
     1921 gcatggacgg accgcaggtg ccatgcaagt ggagaaggct cagctggaga aagagattaa
     1981 tgatcggaag ctggagctgc aggagtttaa gattttaaaa gataaaaaag atgcaaagat
     2041 tagggagctt gaagcccgag tgagtgacct cgaactggag aaggtgaagc tggtgaatgc
     2101 aggctctgag cggctccgag cggtgaagga catcagacat gagagagatc agctgctaaa
     2161 tgaggtgaag actagtagga ctgaactaaa ccatctctca gaggactatg aagtcttaaa
     2221 gaggaacttc cggaacaaaa gtgaggagat ggagagcacc acaaaccgcc tgaagatgca
     2281 gctcaagtcg gctcagtcgg agctggagca aacaaggaac acactcaaga ccatggaagg
     2341 ctccgatggc cacgctatga aggtggcaat gggcatgcag aagcaaatca cagccaagag
     2401 aggtcaaata gatgccctgc agagcaaggt gcagttttta gaagaggccg tgacaagtgc
     2461 caataaggag agacactttt tgaaagaaga gaagagtaag ctcagccagg agttgagtac
     2521 cgtagcaaca gaaaaaaaca agatggctgg ggagttagaa gtgctacggt ctcaggaacg
     2581 acgcttgaag gagaaggttg ccaacatgga agtcgctctt gacaaggcat ctttgcagtt
     2641 tgcagagtgt caagatataa tacagcgcca ggaacaggaa tcggtgcgtc taaaacttca
     2701 gcacactttg gatgtaaaag aacttcaggg ccctggatac acctctaatt cttcagtgaa
     2761 acctcgcctt ctccagccag catctgtgac tcggtctcat tctaacatac catcctccca
     2821 gtcgacaacc agcttcctgt ctcatcactc tataaaaacc aacacaccga aggaggaccc
     2881 gacgagggac ctgaagcagc tcctgcagga gttgagaacc gtgatcaacg aggagccggc
     2941 catggccctg agcaagactg aggaggatgg aaggactcca tctcttggag cactagaaga
     3001 cagagtaaga gactgcatca ccgagtcaag tctgagagca gagctctgcc acaggagcaa
     3061 caactccttg agggagtcca ctgaaggcag caaatccagt gagactctga gcagagagcc
     3121 tgtccctctg catcccggag acctagaaga cccgtctagc tgcttcacgt tcacatctac
     3181 agcaagtcca tctgggaaaa tgtcagcttc tcgttccttc agttcttctc ctaagaagtc
     3241 tccggtgcac tccctcctga ctagctcagc tgaggagtcc gtgaactcca caccacagta
     3301 tcgctctacc aagcctattc attcacccac ctctgcaaaa gattcacagt ctccgtcatt
     3361 agaaacaaca ggaaaaacat gccaaaaact gcagaacaga ctggaaagtt tgcaaaccct
     3421 ggtagaagat ttacagctga agaaccaagc aatgtcttca atgatcagaa atcaagaaaa
     3481 gaggattcag aaagtgaaag accaggaaaa aatgttacta aaatgatgcg ttgcttgccc
     3541 gctctctaca gagggctgac acccgattaa ttgtggtgtt acttataatt agtgccctgt
     3601 gaactttttt ctttttatgt gaattttaat aaaagatacc ctgacctg
//
