LOCUS       NM_001081266            3129 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 142 (Ccdc142), mRNA.
ACCESSION   NM_001081266 NM_172889 XM_620337
VERSION     NM_001081266.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3129)
  AUTHORS   Watahiki,A., Waki,K., Hayatsu,N., Shiraki,T., Kondo,S.,
            Nakamura,M., Sasaki,D., Arakawa,T., Kawai,J., Harbers,M.,
            Hayashizaki,Y. and Carninci,P.
  TITLE     Libraries enriched for alternatively spliced exons reveal splicing
            patterns in melanocytes and melanomas
  JOURNAL   Nat Methods 1 (3), 233-239 (2004)
   PUBMED   15782199
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC104324.21.
            
            On or before Feb 15, 2011 this sequence version replaced
            NM_172889.1, XM_620337.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: BC056930.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN00849374, SAMN00849375 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1123              AC104324.21        138057-139179
            1124-1210           AC104324.21        139499-139585
            1211-1360           AC104324.21        139661-139810
            1361-1491           AC104324.21        139943-140073
            1492-1605           AC104324.21        140153-140266
            1606-1720           AC104324.21        143594-143708
            1721-1898           AC104324.21        143996-144173
            1899-2098           AC104324.21        144296-144495
            2099-3129           AC104324.21        144632-145662
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 35.94 cM"
     gene            1..3129
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /note="coiled-coil domain containing 142"
                     /db_xref="GeneID:243510"
                     /db_xref="MGI:MGI:3045292"
     exon            1..1123
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             169..2385
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 142"
                     /protein_id="NP_001074735.1"
                     /db_xref="CCDS:CCDS39527.1"
                     /db_xref="GeneID:243510"
                     /db_xref="MGI:MGI:3045292"
                     /translation="MARASSSSGPLPPLANVPSSWAQPVGAGEERDEGRRGGLGLLAA
                     VSVPCPDFSRQPWAPASASGPMPFALQRLRATLLRLHREREQLLRARDCARHLQAVVR
                     LLRSGSSAGSLSLQQLHGDLQLCPSRGAALRLGFPGSRETLLLTRPVGLAAQHLEAAI
                     EMQLRSLGRTPASLGLTSQLAELLLALPFYHTLQGHSLNFVPGAARPFPAARVLQLLA
                     AERGCQVADKLAEARGGSGLQEQLRRQCEQERELLPGLLGLVGGVASTDSSGLRLGGP
                     GALWSQYWTLLWAACAKCLDLRVGPWEDPRAMAQELSQALCQAPLPQECEKELLSLCH
                     SLFHQSVICSWDQGFCQALGSALGGQSSPASLSPTSELLQRLFPPLLDSLRQPRPELR
                     LCPPAGPTPVALGLCTLQTTLLWFVGRAQQHLAAWDPGSFLLLLQKDLPPLLSAVEAL
                     SSLASEAALTLEVEQQLGLEIHNLTEKMQLLPKESLGLFVQECHKQATQGFKLHMPRG
                     RYWRLRLCPEPPSDPSEYARIVVYSVLEPVLQGLQGLPPEAQAPALGQALTATLGAWL
                     DHILTHGIRFSLQGALQLKQDFGVVREVLEQEQWGLSQELRQTLLSLSIFQQLDGALL
                     CLLQQPLPKNPVHRRPPRCCLCYEVQTTELPTSSLNSLENLAPPLRLGVSPAQNTHLL
                     STLGGGGRGGGGGGGPGPSPEAYLVGNQQAWLALRLHQHPRWHLPFFSCLRTSPEP"
     exon            1124..1210
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1211..1360
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1361..1491
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1492..1605
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1606..1720
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1721..1898
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1899..2098
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2099..3129
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2463..2468
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /note="hexamer: GATAAA"
     polyA_site      2486
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
     regulatory      3075..3080
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3096
                     /gene="Ccdc142"
                     /gene_synonym="A230058J24Rik"
                     /note="major polyA site"
ORIGIN      
        1 gagtaagtgg gtggccatct ttgttagggg cagaggtcgt ggctacggag ccccagtaag
       61 accacgagac ttccggctag ctggtgagtc ctggcgccca cgggcgtgga gtgcgacggg
      121 aagcggggag gcggcgagcg ttaggttcgt ttgggactcg ccgtgcaaat ggcacgggcg
      181 tccagctcta gtggcccttt gcctccactc gctaacgtac cctcgtcgtg ggcgcagccc
      241 gtgggcgctg gggaggagcg ggacgagggg aggcgtggag ggctagggct actggctgcg
      301 gtgagcgtcc cgtgcccgga cttcagcaga cagccgtggg ctcccgcgtc tgcaagcggc
      361 ccgatgccct tcgctcttca gcggctccgg gccacattgc ttcgtctgca ccgcgagcga
      421 gagcagctcc tgcgggcccg ggactgcgcc cgccacctgc aggcggtcgt gcggctgctc
      481 cgctccggct cctcggccgg ttccctctcc ctgcagcagt tgcacggcga tttacagctg
      541 tgcccatctc gtggggcggc tctgcgcctc ggcttcccgg gctccaggga gacgcttctc
      601 ctgactcgcc ctgtcgggct agctgcccag cacttggagg ctgccatcga gatgcagctt
      661 cgttcactgg gccggacacc cgctagcctg ggcctgacat cccagctagc cgaactgttg
      721 ctggcccttc ccttctacca cactctgcag ggacattccc tgaacttcgt ccccggggcc
      781 gcgcgcccat tccccgcggc ccgtgtgctc cagctcctgg ctgcagagcg gggttgtcag
      841 gtggcagata agctggctga agcccgtggc ggatcgggct tgcaggagca gctccgtcgg
      901 cagtgcgagc aagagcgaga gctgctgccc gggctgctgg gcctggtagg gggcgtggct
      961 agcaccgaca gcagcggact gaggcttggg ggacctggag ccctgtggag ccagtattgg
     1021 accttgctgt gggcagcctg tgctaagtgt ttggacctac gcgtgggacc ctgggaggac
     1081 cctagagcaa tggcacaaga gctgagtcag gcactgtgtc aagcacccct gcctcaggag
     1141 tgtgagaagg agctgttgtc tctgtgtcac agcctgtttc accagtctgt catctgcagc
     1201 tgggaccaag ggttctgcca ggccttagga tcagccctgg gtggtcagag cagccctgcg
     1261 tcactgtctc ctacctctga gctgctgcag cggctttttc ctcccctctt ggatagcctt
     1321 cgacagccca ggccagaact taggctgtgt ccgcctgcag gtcctacgcc tgtcgctctg
     1381 gggctctgta ccctgcagac caccttgctc tggtttgtgg gcagagctca gcagcacctg
     1441 gcagcgtggg accccggttc cttcttgctc ctgctccaga aggatctgcc tcctcttctg
     1501 tctgcggtgg aggcgctgtc cagcctggcc tccgaagcag cgctcactct ggaggtggag
     1561 cagcagctgg gcctagagat ccacaatttg actgaaaaga tgcagctcct gcccaaagaa
     1621 tcactgggtc tgtttgtcca agaatgccat aaacaagcca cacaaggctt caagctccac
     1681 atgccgaggg gtcgatactg gagacttcga ttgtgtcctg aacctcccag tgaccctagt
     1741 gagtacgctc ggatagtggt ctactctgtg ttggagcctg tgttgcaagg acttcaggga
     1801 ttgccacctg aagcccaagc ccctgccctc ggccaggcac tgacagccac actgggcgcc
     1861 tggcttgacc acatcctcac ccatgggatc cggttcagcc tgcagggggc gctgcagctc
     1921 aagcaagact tcggagtggt cagggaggtt ctggaacaag agcagtgggg cctgtcgcag
     1981 gagcttcgcc agactctgct ctcactcagc atcttccagc agctagatgg ggccctgctg
     2041 tgtctcctgc agcaacccct gcccaagaat ccagtccaca gaagacctcc ccgttgctgt
     2101 ctctgttatg aggtccagac cactgaactg cccaccagca gcctcaacag cctggaaaac
     2161 ttggcacccc ctcttcgtct tggagtctcc cctgcccaga acactcacct gctaagcacc
     2221 ctggggggag gaggacgagg aggaggggga gggggaggac caggacctag tcctgaggct
     2281 tacctggtgg gaaaccagca agcctggctt gccctgaggc tgcaccaaca cccacgttgg
     2341 cacctgcctt ttttttcttg cctgaggaca agtcctgaac cctaagttga ctaggaccag
     2401 gggttgcaga tcatgcccca gacaaggaac tgtatgctag agaagcttaa acctgggtgc
     2461 ttgataaaac atgttcataa actagagtcc agaattgaac ccccagatca tcctaggatc
     2521 tgcaatccag agtaataggc aaactacagc ctgaaatctg gatgtcggaa acaatgaaga
     2581 catcttggag ctaaaactag aaggggtcta cagggctagc gctcaggaga caggcaaacc
     2641 ttgctttctc tcgaatccca ggagcaaagc gaaaactgat tcatgaggaa acacagacaa
     2701 agcagacatt tctacacgtg gagggcagtc ttaccccttc cccgtctctg tttctagtca
     2761 ttaggctgta gggcctggac atttaagcct tggctgttgc tacaggggca gggcttgcct
     2821 tctgctgggt ggacagtccc cgcagtgaca tcctttccaa ggaaggagcc aggatgtggg
     2881 gtggtgctga cctagatctc gcaggcagga ccccgaggga gagggctgaa ggacgttttc
     2941 ctgcgaaggg gattttgcac attcactgct tatgctgtgt ggcacagaac actgctaatg
     3001 gctgaagtat tcgcgggtgg ccccggaggt cagccgcgcg aagtaccgcg gagccgccgg
     3061 aagcggtccg ttccaataaa ccgatcccca gtgctactcc ttccggggtg gaggtaacca
     3121 tggcggcgg
//
