LOCUS       NM_001162956            2466 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus coiled-coil domain containing 138 (Ccdc138), mRNA.
ACCESSION   NM_001162956 XR_001533 XR_001535
VERSION     NM_001162956.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Hansen,G.M., Markesich,D.C., Burnett,M.B., Zhu,Q., Dionne,K.M.,
            Richter,L.J., Finnell,R.H., Sands,A.T., Zambrowicz,B.P. and
            Abuin,A.
  TITLE     Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
  JOURNAL   Genome Res 18 (10), 1670-1679 (2008)
   PUBMED   18799693
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC158593.8.
            
            On or before Jul 2, 2009 this sequence version replaced
            XR_001533.2, XR_001535.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC119028.1, ERR2680377.252500.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-126               AC158593.8         72309-72434
            127-171             AC158593.8         73541-73585
            172-229             AC158593.8         73734-73791
            230-350             AC158593.8         81893-82013
            351-478             AC158593.8         83877-84004
            479-657             AC158593.8         87451-87629
            658-816             AC158593.8         98510-98668
            817-936             AC158593.8         101714-101833
            937-1014            AC158593.8         102695-102772
            1015-1122           AC158593.8         103277-103384
            1123-1284           AC158593.8         112621-112782
            1285-1401           AC158593.8         115170-115286
            1402-1594           AC158593.8         119289-119481
            1595-1771           AC158593.8         136273-136449
            1772-1910           AC158593.8         147961-148099
            1911-2466           AC158593.8         150061-150616
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 29.35 cM"
     gene            1..2466
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /note="coiled-coil domain containing 138"
                     /db_xref="GeneID:76138"
                     /db_xref="MGI:MGI:1923388"
     exon            1..126
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            127..171
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            172..229
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            230..350
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            351..478
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            479..657
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            658..816
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            817..936
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            937..1014
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..1122
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1123..1284
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1285..1401
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1402..1594
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1595..1771
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1772..1910
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1911..2466
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2438..2443
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2466
                     /gene="Ccdc138"
                     /gene_synonym="6230424H07Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggtttcccgg gcgaccgcag tcagagactc accatggagc gcagggtggt caagccaccg
       61 ggacaggata tggtagtgga gcgtctcaaa agccgctacg gcctggcggg aaggtgcccc
      121 gtggaggaaa acgacatgac tggtgtgtgg gctgctctga tgaatcaaca gcatgaactt
      181 tcagattttg accagactaa atataaaaga agaattgtga cctccccaga tggtttagat
      241 acttacagct ctggagataa agtgggttcc tcaccaagat attactctga tggaaggaat
      301 catccgactc cacctttctg cagttccttc aaacatttaa atgtgaactg cctagatgat
      361 gaactggatt cttttcatga tttaaagaaa tgggaaacag aaaaggaatt aatggaagat
      421 gatcatagag atggtgcctc caaaataaca aagcagtctt tcaaagaaat ggaaaccgat
      481 gccttgatga ctagcatggc ctcaggcctt gagactgaat gctgcagtgg ttccattgac
      541 agtcctctga agcaggccgt gtacccaaga cccaaagtgt caaagaagca gggtttgctt
      601 ccacatgaaa taaatcaaat atatgatgaa ttataccata tacatatgaa actgcagtat
      661 gaaactacag cacagaagaa atttgcagaa gaacttcaaa aacgagaaca gtttttagca
      721 gaacgagaac agctgctttt cagccatgaa actgccttga gcaaaattaa aggtgtgaaa
      781 gaagaggttc tgacaagatt tcagatttta aaggagcaac atggtacgga aattgaacac
      841 ttaactgaag ctcttaagga aaagaataaa gagaacaaga gaatgaggtc ctcctttgat
      901 accctgagag agctgaatga taacttaaga aaacagctaa atgaagtaag tgaggaaaac
      961 aagaagatgg agattcaggc caaaagggtc caagctcgtt tagataactt acagaggaag
     1021 tatgagttta tgacagtgca gagactgaaa ggagactccc atgctgctca tgaagtgaag
     1081 agttcaaaac aagaaaaggc cccagctcca aaacccttca aggcagcact caatggacaa
     1141 gtgtacgagc tgctcactgt tttcatggat tggatatcag actgccacct tagcaaagtg
     1201 gagcctgagg aacctggtgt agatggggga aagccaccag ccaagccttc ccagagaagt
     1261 gacattcaag agaaatgtgt aaagctgttg cctatgatga cagagcagct ccagtggatg
     1321 ccgctagtga gcgccaaact gcacgagccg ttcgtaaggt ttatctattg gtctctgagg
     1381 cagctggatg ccagcgcacg gcaatcaact atggcatcaa cattgaggag attgggggaa
     1441 gacgtattta aaggagttac aatgaaagga actcaggata attctttaga gcattctgtg
     1501 gagaacaaag caaagacagc agtgttcttc aagagctcca gcttgccact gagattctta
     1561 tcaaccttaa ttgtcctcag aacggtcact caagctgact acctagctca agcgtttgac
     1621 tccctttgtt tggacttgaa gacagatgaa ggaaaaacct tatttttgga gtaccaagcc
     1681 attccagtaa tcctaaaaca cctgagaata tccagtaaag ggctcttatc caatgtcatc
     1741 gacagcctgc ttcagatgac agtagagtca aagtccctgc agccattcct ggaagcctgt
     1801 agtaactctt tgttttttcg tacttgttct gtgctgctgc gaacgccgaa acttgatctt
     1861 cacatcctgg aaaagctcag catcattcta cagaagcttt ccaaaatcaa gagtaacaag
     1921 aagctctttg aagtttttac cattcaccta atgcttcagg aaatacaaag gacaacacat
     1981 ccagagcacg cctttctctg tattaatctg aattcaactc tgttcaacct gggtttgaca
     2041 aaatgtaact ccctggtcac tagtacaagc cattagaaaa atgtgtgtgt gtgtgtgtgt
     2101 gtgtgtgtgt gtgatatgta tgtatatgtg ttctttattt gtaaaagtgg aaaaatcact
     2161 aaaatacaat tcctcagagt aaaattatta acagcatcat ttatcatgaa agatatctag
     2221 aaagattttt cagcaacgta aatgagaccc gtagaaggta tggctgtttt agaatgtttc
     2281 agtttaaggt aatactaatg tacaagatga cttttccaga attcaaggca tcagggttag
     2341 aattcaaagc aatagggtta cagtttgtaa aaatatttta ggaaaagtct tcttgaaatt
     2401 atgtgattat ttggaatata atttgtcctt atgtggaaat aaactatgtt atcatttttc
     2461 ccttaa
//
