LOCUS       NM_028384               2656 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 13 (Ccdc13), mRNA.
ACCESSION   NM_028384 XM_003084812 XM_003084813 XM_003084814 XM_003084815
            XM_003086766 XM_003086767 XM_003086768 XM_003086769 XM_003086770
VERSION     NM_028384.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2656)
  AUTHORS   Stauber,M., Weidemann,M., Dittrich-Breiholz,O., Lobschat,K.,
            Alten,L., Mai,M., Beckers,A., Kracht,M. and Gossler,A.
  TITLE     Identification of FOXJ1 effectors during ciliogenesis in the foetal
            respiratory epithelium and embryonic left-right organiser of the
            mouse
  JOURNAL   Dev Biol 423 (2), 170-188 (2017)
   PUBMED   27914912
REFERENCE   2  (bases 1 to 2656)
  AUTHORS   Mu,X., Zhao,S., Pershad,R., Hsieh,T.F., Scarpa,A., Wang,S.W.,
            White,R.A., Beremand,P.D., Thomas,T.L., Gan,L. and Klein,W.H.
  TITLE     Gene expression in the developing mouse retina by EST sequencing
            and microarray analysis
  JOURNAL   Nucleic Acids Res 29 (24), 4983-4993 (2001)
   PUBMED   11812828
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BY082969.1,
            BC147354.1, AC165080.4, BM949737.1, BY296983.1, BB857029.1,
            AW911821.1, BB762565.1 and BG800529.1.
            
            On or before Jun 2, 2011 this sequence version replaced
            XM_003084813.1, XM_003084814.1, XM_003084815.1, XM_003084812.1,
            XM_003086768.1, XM_003086769.1, XM_003086770.1, XM_003086766.1,
            XM_003086767.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. There are no full-length mouse
            transcripts supporting this RefSeq; it is predicted based on a
            combination of tiled partial mouse transcripts and on alignment of
            the full-length homologous human mRNA, BC036050.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.1104805.1,
                                           SRR7345562.1814266.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-283               BY082969.1         4-286
            284-882             BC147354.1         29-627
            883-912             AC165080.4         92956-92985
            913-1498            BM949737.1         1-586
            1499-1647           BY296983.1         161-309
            1648-1755           BB857029.1         222-329
            1756-2212           AW911821.1         7-463
            2213-2388           BB762565.1         118-293
            2389-2656           BG800529.1         1-268
FEATURES             Location/Qualifiers
     source          1..2656
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 72.63 cM"
     gene            1..2656
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /note="coiled-coil domain containing 13"
                     /db_xref="GeneID:100502861"
                     /db_xref="MGI:MGI:1920144"
     exon            1..51
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            52..278
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..2187
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 13"
                     /protein_id="NP_082660.1"
                     /db_xref="CCDS:CCDS57717.1"
                     /db_xref="GeneID:100502861"
                     /db_xref="MGI:MGI:1920144"
                     /translation="MAADESSADTLRLQFKAMQELQHRRLQKQMEKKREKELSCQSKA
                     DNQEGFMVIPDGLSLLDTEEQNLKNIFEKRVLEDEIQHLRSELRETVDENGRLYKLLK
                     ERDFEIKHLKKKIEEDRFAFTGASGMAGDLVATKIVELSKKNRGLMAESESAKVRIKQ
                     LTNRIQELEHQLQMASAKPPSKGATDAGAKPLKTQTGDRALLETPEVKALQDRLAATN
                     LKMSDLRNQIQSAKQELRVAQKVLANEVGEDVNIQQLLASPGTWRGRAQQILVLQSRV
                     RDLEKQLGQRQNKPAGSSSSEVPLSSDSRKMTAQEKNLLRIRSLERDKQESWEKLASE
                     RDTLQTELEELRKKFEGMRSRNKVLSSEVKTLRSQMTTLVEKGRHDDELIDALMDQLK
                     QLQDILSSLSVQEESRRTSQQHLDQKVNSEAQRSSSLVAQLRAMVADREAKVRQLELE
                     IGQLSVQYLHGKGGGEGASPADARFPEDQTPITNSPASAGDHVGRLGSSRSVTSLGHT
                     LVESALTRPSLPSPHGTSPRFSDSPEQKGWQAQAAEMKALWQAAEVERDRLNEFVTVL
                     QKRVEESSSKLLEAERRLQEERQRAVLLEQHLEKMRLEPSRASVSQKTKNKPGPPAAN
                     TKPNSAGSAKKDSSSTQLCDMPMESQIQELNARLAIQMEENGILRDALGSALRGKEED
                     FRMYHQTLGQVKGVFLQALRQQKANKQ"
     exon            279..427
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            428..570
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            571..660
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            661..777
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            778..882
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            883..1044
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            1045..1221
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1428
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            1429..1556
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            1557..1640
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            1641..1763
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            1764..1912
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            1913..2027
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     exon            2028..2640
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2619..2624
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /note="hexamer: AACAAG"
     polyA_site      2640
                     /gene="Ccdc13"
                     /gene_synonym="2900041A11Rik; Gm188"
                     /note="major polyA site"
ORIGIN      
        1 ggcggaggaa gtgcccgcgg cccttaagac agaccccgaa gcgcagccgc gggcaagatg
       61 gcggctgatg agagctcggc agatactctg cgactccagt tcaaggccat gcaggagcta
      121 cagcaccgaa ggttacagaa gcagatggag aaaaagaggg agaaagagct gagctgtcaa
      181 agcaaagctg acaaccagga agggttcatg gtgatcccgg atggcctcag cctcctcgac
      241 acagaggagc agaacctaaa aaacatattt gagaagaggg tgttggaaga tgaaatccag
      301 catcttcgca gtgagctccg ggagacagtc gatgagaatg ggcgactata taagctgctg
      361 aaggagaggg actttgagat caaacacctc aagaagaaaa tagaagagga cagattcgcc
      421 ttcacagggg cgtctgggat ggctggagat ctagttgcca ccaaaattgt tgaactgtcc
      481 aaaaagaacc gggggctgat ggccgagtca gagagcgcaa aggtcaggat aaagcagctg
      541 accaatcgca tccaggagct ggaacaccaa ctgcagatgg cgtcagccaa gccaccatcc
      601 aagggggcca ctgatgcagg ggctaagcca ctgaagaccc agacgggaga cagagctttg
      661 ctggagaccc cagaggtgaa agctctgcag gacaggctgg cagccaccaa cctgaagatg
      721 agtgacctgc gcaaccagat ccagtctgca aagcaggagc tccgtgtggc ccagaaggtt
      781 ctggccaatg aagttgggga agatgtaaac atccagcagc tgctggcctc acctgggacc
      841 tggcggggaa gggctcaaca aattctagtg ctgcagagca gggtccgaga tcttgagaag
      901 caactgggac agcgtcagaa caagcctgca ggttcatcga gctctgaggt gcctctcagt
      961 tcagactcaa ggaagatgac agcacaggag aaaaacctac tgaggatccg cagcctggag
     1021 agggacaagc aggagagctg ggagaaactg gccagcgagc gggacaccct ccagacagag
     1081 ctggaggagc tgagaaagaa gttcgagggc atgaggtctc gcaacaaggt gctgtccagc
     1141 gaggtgaaga ccctcaggag ccagatgaca accctggtgg agaagggcag gcatgacgat
     1201 gagctgattg atgcccttat ggaccagcta aagcagctgc aggacattct gagcagcctg
     1261 agtgtgcagg aggaatcgag acgcacatca cagcagcacc tggaccagaa ggtcaacagt
     1321 gaggcccaac gaagcagcag ccttgtggcc cagctgcggg ccatggtggc tgatcgtgaa
     1381 gccaaggtgc ggcagctgga gctggagatt gggcaactca gtgtccagta tcttcacggt
     1441 aaaggagggg gtgagggggc cagccccgcc gatgccaggt tccctgagga ccagaccccg
     1501 ataaccaact ctccagcctc agcaggcgat catgttggca ggcttggatc ttcccgctct
     1561 gtgaccagcc tgggccatac acttgtggaa tctgctctca cgaggccttc cctgcctagt
     1621 ccccatggga catcgcccag gttctcggac tccccagaac aaaaaggctg gcaggcacaa
     1681 gctgcagaaa tgaaggccct ctggcaggct gctgaggtgg agcgggaccg gctcaatgag
     1741 tttgtcactg tgctgcaaaa gcgggtggag gagagcagca gcaagctgct agaagctgag
     1801 cggagactgc aggaagagcg ccagcgagct gtgctgttgg aacagcacct ggagaagatg
     1861 cgcctagagc catccagggc ctcggtgtcc cagaaaacta agaacaagcc agggcctcct
     1921 gctgccaaca ccaagcctaa ctcagctgga agtgccaaga aagactcatc ctccacacag
     1981 ctctgcgata tgcccatgga gtcccagata caggagctga atgccaggct ggccatccag
     2041 atggaagaga acggaatact gagggacgcc ctgggcagtg ccctgagagg gaaggaggag
     2101 gacttccgca tgtaccacca gaccctgggc caggtgaaag gggtcttcct gcaggcacta
     2161 cggcagcaga aagccaacaa gcagtagaac acagctgtta gctcaactcc tggaggacca
     2221 acacttcagg ttcaggcagc gctcactcgg ctcctcctag aagcggtttg gtgtcgtagc
     2281 agagcaggca agctgaggat acctgagcag gggcggagcc agccaggggc ggagccagcc
     2341 aggggcggag ccagccattc ctgcctggtg gctggtgcgt ttccctgagc aggtgctgtt
     2401 gtccttcctt gccctagggc ctctctgggg ccctgggatg ctactacggg ctctccacac
     2461 atagatgagc ccctcggtgc ttcctgatgg ctcatccacc tggagccatc tagccctccc
     2521 ctgtagcccc tcactcggcc ctagcaccca ctggccatcc tgctgtgccc agcctctctg
     2581 tgtacttact gcacagggca gagccctgag cttgaaataa caagtctact ttcacagtca
     2641 aaaaaaaaaa aaaaaa
//
