LOCUS       NM_175098               2367 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 126 (Ccdc126),
            transcript variant 1, mRNA.
ACCESSION   NM_175098
VERSION     NM_175098.6
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
REFERENCE   2  (bases 1 to 2367)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY126756.1, AK018135.1, BC095987.1 and BX513032.1.
            
            On Jul 24, 2015 this sequence version replaced NM_175098.5.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660817.46917.1,
                                           SRR1660819.137070.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-88                BY126756.1         1-88
            89-2132             AK018135.1         11-2054
            2133-2347           BC095987.1         1984-2198
            2348-2367           BX513032.1         479-498
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 23.86 cM"
     gene            1..2367
                     /gene="Ccdc126"
                     /gene_synonym="6330407D12Rik"
                     /note="coiled-coil domain containing 126"
                     /db_xref="GeneID:57895"
                     /db_xref="MGI:MGI:1889376"
     exon            1..207
                     /gene="Ccdc126"
                     /gene_synonym="6330407D12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            208..594
                     /gene="Ccdc126"
                     /gene_synonym="6330407D12Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             357..779
                     /gene="Ccdc126"
                     /gene_synonym="6330407D12Rik"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; coiled-coil domain-containing protein 126"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 126
                     isoform 1 precursor"
                     /protein_id="NP_780307.1"
                     /db_xref="CCDS:CCDS20125.1"
                     /db_xref="GeneID:57895"
                     /db_xref="MGI:MGI:1889376"
                     /translation="MFRTISRKNMSQKLSFLLLVFGLIWGLMLLHYTLQQPRRQSSVK
                     LREQILDLSKRYVKALAEESRSTADVDSGASMAGYADLKRTIAVLLDDILQRLVKLES
                     KVDYIVVNGSATNTTNGTNGNLVPVTTNKRTSVSGSVR"
     exon            595..2354
                     /gene="Ccdc126"
                     /gene_synonym="6330407D12Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2328..2333
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc126"
                     /gene_synonym="6330407D12Rik"
                     /note="hexamer: AATAAA"
     regulatory      2333..2338
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc126"
                     /gene_synonym="6330407D12Rik"
                     /note="hexamer: AATATA"
     polyA_site      2351
                     /gene="Ccdc126"
                     /gene_synonym="6330407D12Rik"
                     /note="major polyA site"
     polyA_site      2354
                     /gene="Ccdc126"
                     /gene_synonym="6330407D12Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggagaatggg ggaagggtgg ccgggaggcg gagcggaaac cgggagtagc gtccccgggt
       61 gccgagcgct ctcggtccta cctccgtcct ggcccgcagg ctgttgcggc gccgctaacg
      121 ccctcccgtg gcgggctgtg gctgtacttc cagtttgtga gccccgcggc ggcggcccgc
      181 gtgattgaaa ggaaaccagc aggccagttg tgtgatgaca gacgcagccc tgctgaagat
      241 ggacagacgg cagtagtcag ctgttcctcc tctctcctct caaaagactt gatcgtttgg
      301 tgtcttgttt ccagccactg ctcctcgatc aagtctgtct gcttccttcg tcagacatgt
      361 tccgtacaat ctcaaggaaa aatatgtccc agaagctgag cttcctgttg ttggtgttcg
      421 gactcatctg ggggctgatg ctacttcact acactttgca acagccgcgg cggcagagca
      481 gcgtcaagct tcgtgagcaa atcctagatt taagcaaaag atacgtgaaa gctctggcgg
      541 aggagagcag gagcacggcg gatgtggaca gcggcgcgtc catggcaggc tatgctgatc
      601 tgaagagaac gattgcagtc ctcttagatg acattttgca gcgcttggtg aagctggaga
      661 gcaaagtcga ctatattgtt gtgaacggtt cagccaccaa cactaccaat ggcaccaatg
      721 ggaatttggt gccggtaacg accaacaaaa ggacgagtgt ttcgggcagc gtcagatagc
      781 agtgaagggc accttgcacg gctaccactg tggattccat ccatcgcagc gcacctctta
      841 aactgctgcc taggacagag taatacttga caataaaagc tctacacatc tccaaggagc
      901 ttgctggatt cataggatgt taattctgta tatataatcg caggcattat tagtttgctt
      961 tgacacaaag ctctttaatg ctgttctgta ttcttaacag gaatttggtt aacaaggttg
     1021 atatggtaag cagggaggtc atctctgtac agagatcgag aaacaaaagc accagaaaga
     1081 catggagtcc tttctagaaa tacttatcta agtatataat atgtttgtca gataagtgga
     1141 cagtaacgtt ggactcattc tgtcacccgc cctcagcagt gtccctgtga gtagaaaatg
     1201 tgcttacttc cagaactata ttttgttact caatttgcga gcagagaaag gaagtgtcat
     1261 gttgaaaatc atgttttgaa atagacccaa agaatgtttt catttgcact atccttcaaa
     1321 attaactgaa ggttaattgt atatttttaa aaatagcatt tgtaagaata taattttgaa
     1381 atgggtagca gccactgtcc atagctaacc gtcaggggac aatttaatag aaatgggagt
     1441 aattgctaat ctcatacttt aaaatttctt acatatattc tgcagaatat aataaatatt
     1501 tttatgatga aatgaaaaat aaaatatgca tgatttttca caatcatggc tgttggtttg
     1561 aaaatgaatc tcagtgtcac atgcctgtag ccatggaacc agggaggctg ggacaggaga
     1621 gctgcaagct caatgctagc ctgggcagca gagcagaccc tatgtaaaaa ccattaggaa
     1681 agtccatcat ttccatattc tggtaagtgt tcttcggtta ttttggtgga agaaggaaag
     1741 ggcttgagga ctttagccag atagatgtat ataataaatg ttatttgtgc tgcacagaag
     1801 tgcttggaaa attaatgtga gttgatgtta tgtaagtata taaggaccac tttacagaat
     1861 taagaacatt aaaatataaa ttatgaaaat ggtttatctt tttagagaaa cagctactgt
     1921 atacagcaca agaaatcttg acttggttaa ttctagtata gaataaaaca tgtctttatt
     1981 taaatagcct ttgtagcaaa tccaattgct atatagtatt ctatatttcg tagtatttat
     2041 tctatataat aactgcttat gtgcagctag cctctagatt tagagtaaat tgaatttagt
     2101 ttttgatatt tttcattatt ataatgctac cacaaaagta gcagtgatta taatattttg
     2161 ttaaaataag tataagaaat atattgtttc atgaaagata actttctgaa atgtcttccc
     2221 tgtaccttta tgtaaagaaa tgatgcccca ttgcccatag attctgcagt accgttcggt
     2281 ctctgaggag tcctgagcat ctctgatttc attgctttca gggatgaaat aaaatatatt
     2341 gtttatattc acaaaaaaaa aaaaaaa
//
