LOCUS       NM_027159               1721 bp    mRNA    linear   ROD 02-JUL-2024
DEFINITION  Mus musculus coiled-coil domain containing 115 (Ccdc115), mRNA.
ACCESSION   NM_027159 XM_129811
VERSION     NM_027159.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Pellicano,F., Thomson,R.E., Inman,G.J. and Iwata,T.
  TITLE     Regulation of cell proliferation and apoptosis in neuroblastoma
            cells by ccp1, a FGF2 downstream gene
  JOURNAL   BMC Cancer 10, 657 (2010)
   PUBMED   21118521
  REMARK    GeneRIF: Ccp1 regulates cell number by promoting proliferation and
            suppressing cell death. FGF2 was shown to enhance the effects of
            ccp1, however, it is likely that other mitogenic factors present in
            the serum can also enhance the effects.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1721)
  AUTHORS   Pellicano,F., Inglis-Broadgate,S.L., Pante,G., Ansorge,W. and
            Iwata,T.
  TITLE     Expression of coiled-coil protein 1, a novel gene downstream of
            FGF2, in the developing brain
  JOURNAL   Gene Expr Patterns 6 (3), 285-293 (2006)
   PUBMED   16378758
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC106841.11, AK162237.1 and AI853654.1.
            
            On May 15, 2009 this sequence version replaced NM_027159.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC019430.1, AK162237.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-388               AC106841.11        126918-127305
            389-1654            AK162237.1         2-1267
            1655-1721           AI853654.1         1-67                c
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 13.22 cM"
     gene            1..1721
                     /gene="Ccdc115"
                     /gene_synonym="2310061I09Rik; Ccp1"
                     /note="coiled-coil domain containing 115"
                     /db_xref="GeneID:69668"
                     /db_xref="MGI:MGI:1916918"
     exon            1..445
                     /gene="Ccdc115"
                     /gene_synonym="2310061I09Rik; Ccp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             335..877
                     /gene="Ccdc115"
                     /gene_synonym="2310061I09Rik; Ccp1"
                     /note="coiled-coil protein 1"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 115"
                     /protein_id="NP_081435.1"
                     /db_xref="CCDS:CCDS14866.1"
                     /db_xref="GeneID:69668"
                     /db_xref="MGI:MGI:1916918"
                     /translation="MAVQALREELDSKCLQLLSDLEELEAKRAALNARVEEGWLSLAK
                     ARYAMGAKSVGPLQYASRMEPQVCVRASEAQDGPQTFRVIKADAQTPEEVGPSEASLR
                     RRKGPTKTKELGSAVVPQDPLNWFGILVPHSLRQAQASFRDGLQLAADIASLQTRINW
                     GQSQLRGLQKKLKELDPGPA"
     exon            446..549
                     /gene="Ccdc115"
                     /gene_synonym="2310061I09Rik; Ccp1"
                     /inference="alignment:Splign:2.1.0"
     exon            550..632
                     /gene="Ccdc115"
                     /gene_synonym="2310061I09Rik; Ccp1"
                     /inference="alignment:Splign:2.1.0"
     exon            633..764
                     /gene="Ccdc115"
                     /gene_synonym="2310061I09Rik; Ccp1"
                     /inference="alignment:Splign:2.1.0"
     exon            765..1705
                     /gene="Ccdc115"
                     /gene_synonym="2310061I09Rik; Ccp1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1678..1683
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc115"
                     /gene_synonym="2310061I09Rik; Ccp1"
                     /note="hexamer: AATAAA"
     regulatory      1683..1688
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc115"
                     /gene_synonym="2310061I09Rik; Ccp1"
                     /note="hexamer: AGTAAA"
     polyA_site      1696
                     /gene="Ccdc115"
                     /gene_synonym="2310061I09Rik; Ccp1"
     polyA_site      1705
                     /gene="Ccdc115"
                     /gene_synonym="2310061I09Rik; Ccp1"
                     /note="major polyA site"
ORIGIN      
        1 gcttcaccgg tgcttgagct ggtcaggcag caggctagcg aagagtaaaa gcaggaactg
       61 tgcgcatggc ttcctagatt caagttaagg tccgactttt ggtagccatc ggattcgaga
      121 agtatcccgc tccaggcgct aatccgcgtc ctggctggtg acagggatca cccggaagtt
      181 gaagcctttg acttccgggt cacgattagt actgcccccc taagggcgga tcttgagcgc
      241 ttattggctg tcatgcacat ggccgcgcag tgattcggcg gcttggaagg aagtggctcc
      301 gcccatccgc gcgtgtccca agactggctg ggccatggcg gtccaggctc tgcgagagga
      361 gttggactcc aagtgcctac agctgctcag tgacctggag gaactggagg cgaagcgggc
      421 ggcgctgaac gccagggtgg aggagggttg gctctcactt gccaaggctc gctatgccat
      481 gggagccaag tcggtaggac ccctgcagta tgcctcgcgt atggagcctc aggtctgcgt
      541 gcgtgccagc gaggcccagg atggacccca gaccttcagg gtgatcaaag ctgacgccca
      601 gacccccgag gaagtggggc ctagcgaagc atctctgcgc aggcgcaagg gccccaccaa
      661 gaccaaagag ttaggatctg ctgtagttcc tcaagatccc ttgaactggt ttggaatttt
      721 ggttcctcac agtctgcggc aggcccaagc cagcttccgg gatggcctac agctggctgc
      781 agatatagcc agtctccaga ctcgcatcaa ctggggtcag agtcagcttc gaggcctcca
      841 gaaaaaactg aaggagttgg accctgggcc tgcctgacct gcatccacat tgggaggcac
      901 tgagcatagc tgccgtggat gctaccacct tacctcaggc cttcttcttt ttataagcag
      961 cccctgtctc agctgatgcc ccacctagaa atgtccttag tctgcgcggt ttctagcttt
     1021 tcgaggcatg aagttgagtt atgaagtttg atgaagcaaa gctgagcagt gtagagagca
     1081 cctagttcta ggccatggtc tcagggcatg acagtgacgt gtgaataacc tgcggcagcc
     1141 atctgggata gtgaagccct gcagaaatgg tgacagagaa gaaagggagt ctagaaacat
     1201 aaggtagatc aggacaattc cagtcaataa aagtacctca ggctgggcgt ggcagcgcgt
     1261 gcctgtagct ccagcaactc tagaggctga ggcaggagga tcacttaagc cctgggaagt
     1321 ttatagacaa gacagcacac acacacacac acaaatacac aaataccaga atagctagca
     1381 ggaaatatta cttctgttat aaaaggaaaa ataactcatt cttccgggga atcagggtga
     1441 ccttcctgat tgcacttagc ttatagaagt gagacccagc tgctttgctg aaggtgcatt
     1501 ctctcacctg gaaactgtgt cttgcttcac gtttttttcc tgagctatcc agttgtgttg
     1561 ggaaggggaa tgtaattgtt tgtggggtgt aaatatttct tcctaatttg ttaattttgc
     1621 ttatattggt ttttctactt atgaattgta aaaacagaaa tttgtacaga aaaattgaat
     1681 aaagtaaaag ctacagtaag tgtcaaaaaa aaaaaaaaaa a
//
