LOCUS       NM_001160399            2818 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Mus musculus coiled-coil domain containing 112 (Ccdc112), mRNA.
ACCESSION   NM_001160399 XM_140320 XM_911119
VERSION     NM_001160399.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2818)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   2  (bases 1 to 2818)
  AUTHORS   Pritsker,M., Doniger,T.T., Kramer,L.C., Westcot,S.E. and
            Lemischka,I.R.
  TITLE     Diversification of stem cell molecular repertoire by alternative
            splicing
  JOURNAL   Proc Natl Acad Sci U S A 102 (40), 14290-14295 (2005)
   PUBMED   16183747
REFERENCE   3  (bases 1 to 2818)
  AUTHORS   Hackney,J.A., Charbord,P., Brunk,B.P., Stoeckert,C.J.,
            Lemischka,I.R. and Moore,K.A.
  TITLE     A molecular profile of a hematopoietic stem cell niche
  JOURNAL   Proc Natl Acad Sci U S A 99 (20), 13061-13066 (2002)
   PUBMED   12226475
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC148019.5, CJ174591.1, DT929545.1, AA241279.1, AC124717.3,
            DV656314.1, BQ831910.1 and AW491530.1.
            
            On or before May 24, 2009 this sequence version replaced
            XM_911119.3, XM_140320.7.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660817.302965.1,
                                           SRR7345562.1765903.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-25                AC148019.5         84578-84602         c
            26-456              CJ174591.1         3-433
            457-596             DT929545.1         256-395
            597-1015            AA241279.1         73-491
            1016-1036           AC124717.3         16044-16064
            1037-1101           AC124717.3         19053-19117
            1102-1528           DV656314.1         1-427
            1529-1565           BQ831910.1         23-59
            1566-1568           AC124717.3         23040-23042
            1569-1663           BQ831910.1         63-157
            1664-1664           AC124717.3         23138-23138
            1665-1669           BQ831910.1         159-163
            1670-2768           AC124717.3         23534-24632
            2769-2818           AW491530.1         1-50                c
FEATURES             Location/Qualifiers
     source          1..2818
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 24.48 cM"
     gene            1..2818
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /note="coiled-coil domain containing 112"
                     /db_xref="GeneID:240261"
                     /db_xref="MGI:MGI:1918800"
     exon            1..235
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             119..1696
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 112"
                     /protein_id="NP_001153871.1"
                     /db_xref="CCDS:CCDS50281.1"
                     /db_xref="GeneID:240261"
                     /db_xref="MGI:MGI:1918800"
                     /translation="MAALTTVVVAAAATAVAGAVAGAGAAAGTGVGAAPTPQQSDGGC
                     SASGGIRSFQLQNWKQKVSRTKKAEFIRTAEKFKNQVIVIEKDKHSHFYNQRGDFRTE
                     YNMLEELENKLINSRKTERAKIQQQLAKIHNNVKKLQNQLKDVKPTPDFVEKLREMME
                     EIENAINTFKEEQRLIYEELIQEEKTTNNELSAVSRRIESWALGNSETEKAFRAISSK
                     VPVDRVTQRTLPEQVVEFEKFLQQTGGRQGGWDALDHQNFVKVRNKHKGKPTFMKEVV
                     EHLPGRTLDEVQQHEKWYQKFLTLEEKKKESIQNWKTKKQQKKEEILKLKEKVDTVPL
                     PSQSKAEDSPKQREEQRKKQKLAVEAWKKRKSLEMSAKLASQLREEEEKERKQQRERQ
                     RQSKLKLLLESYTQQRREQEEFLRLEQEIKEKAEKAEKRKTAADELARFQERDLHKLE
                     LKILDRQAKEEEKAEKQRRLTKLKEKVENNVSRDPSRLYKPTKGWEERTKKIGPSGSG
                     PLLHIPHRAIPTWRQGI"
     exon            236..357
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            358..479
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            480..569
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            570..645
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            646..1036
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1037..1450
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1451..1546
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1547..1665
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1666..2801
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2167..2172
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2187
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /note="major polyA site"
     regulatory      2312..2317
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /note="hexamer: TATAAA"
     polyA_site      2339
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /note="major polyA site"
     regulatory      2774..2779
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2793
                     /gene="Ccdc112"
                     /gene_synonym="8430438M01Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggggtcggct tcgcgctcct ccccagtggt ccagcggttc ggaacagtgt gcggagcgtg
       61 ggagaacgcc cacgggagcc gatcccgcgc acgggcgcgg gagtctcgac gaggaaacat
      121 ggcggctctg actacggtgg tggtggcggc ggcggcaaca gcagtcgccg gggcggtggc
      181 gggggcgggc gcggctgcgg ggaccggcgt gggagcggcg ccgacgccgc aacagagtga
      241 tggcggctgt agtgcttcag gtggaattcg ttcttttcag cttcaaaact ggaaacagaa
      301 agttagtcgg acgaagaaag cagaattcat acgtacagca gaaaaattta aaaaccaagt
      361 tattgtcata gaaaaagata aacacagtca tttctacaac caaagaggcg acttcagaac
      421 tgagtataat atgctggaag aactggaaaa caaactgatc aacagcagga agacagaaag
      481 agcaaaaatc cagcaacagt tggccaagat acataacaac gtaaagaaac ttcagaacca
      541 gctgaaagat gtgaagccca cacctgattt tgtcgagaag ctcagagaaa tgatggaaga
      601 aattgaaaat gcaatcaata cttttaaaga agaacagaga ctaatatatg aagagcttat
      661 tcaggaagag aaaacaacca ataatgagct gagtgccgtc tccaggagga tcgagtcctg
      721 ggcgctgggt aattcggaaa cagagaaagc tttcagagcc atctcaagca aagttcccgt
      781 agacagagtg acacagagga cgcttccaga acaagtggta gaatttgaaa aattcctcca
      841 gcaaacggga gggcggcagg ggggctggga tgccttggac caccagaact ttgtgaaagt
      901 gaggaacaaa cataagggga agccgacctt tatgaaggag gttgtagaac accttccggg
      961 aagaactctg gatgaagttc agcaacatga gaagtggtac caaaaattcc tgactttaga
     1021 agaaaaaaaa aaagagtcta ttcaaaattg gaaaaccaaa aagcagcaaa agaaggagga
     1081 aatactcaag ttaaaagaaa aggtggacac cgtgcctctg ccttctcaaa gcaaagcaga
     1141 agatagtcca aagcagagag aggaacagag gaagaagcag aagctggcag tggaagcttg
     1201 gaagaagcgg aagagtctag agatgtcagc gaagcttgct tcccagctca gagaggagga
     1261 agagaaggag agaaagcagc agagagagcg gcagcggcag tccaagctca agctgctcct
     1321 ggagagctac acccagcaga ggcgggagca ggaagagttc ctgaggcttg agcaggagat
     1381 aaaggaaaag gcagagaagg cagagaagag gaagactgct gcggatgagc ttgccaggtt
     1441 tcaagaaaga gatttacata aactcgaatt gaaaattcta gatagacagg caaaagaaga
     1501 agagaaggca gaaaaacaaa ggcgactgac aaaattaaaa gaaaaggttg aaaataatgt
     1561 cagtagagat ccttctaggc tttacaaacc taccaaaggc tgggaagaac gaaccaaaaa
     1621 gataggtccg tcaggctctg ggccacttct ccatatccca cacagggcca ttcctacctg
     1681 gcgacaagga atctagagga gctatgagat attacaattg cttgataaga tgttagtata
     1741 ttgctatttc aggagaagac gattagctat gctatttaag gatcactaac ttagtcaggt
     1801 tggttactgt gctgtgtttg cattgcgagg tttaagtgtc agagcattgt cagttctgtt
     1861 cctacgaaga tggtgtatat tagcctgtta ttgatatgaa agttatttaa ataggtttgt
     1921 attacaaatt taaatactca aaatatttcc aagatgtttt tatcatggct tagtgatgta
     1981 atttgggaaa atcagtcttt tttaagccaa aattttatta cttttataac ttgcaagtaa
     2041 ctaagcctga gtaacaaaaa cataagattt tttgttttgt ttttttaaag agttgttcat
     2101 tctaagttta acaaaatggt agtttgtcaa ttgtttcatt ttttgtgtaa tggctatttg
     2161 tatttgatta aagcatgctt tgttttatat gaagactatt ttaaataacc tcccttccta
     2221 catgttccta tttcatatat tataatggca tccttgggat ttcctgcaac tatgtcagat
     2281 tttctttcaa cctttttgga ctgcacagat ttataaaatc tttgtgtctt tgtaccttat
     2341 tggctggcac cattttctta tgcttgcccc aaagtaggga catctttctt ttgaagtagg
     2401 ctagtatgtt tactgatgtc atgacactgc aaagtagaaa acttcatgtg tgaaagcaga
     2461 actcaagcca gcttttcata gaaagcacct tatgtcataa gatttcagtt cacaaggaca
     2521 gtgctgtata cacaaaatac aggacattta cttatcacaa atttgatctt tagatatctt
     2581 taattataac tggagacata tagtctgaat ggttgctgtt ttgtaagaaa ttgattttct
     2641 acaaaccaaa atttagttgg tttttgaaga atctagtttc agcctaatct ttggtggaat
     2701 tctttctcga gtgccttgtg aacttaaagg ggatagtata tgaccaaggc aacttaaatt
     2761 ctatttttgt atgaataaag ttttatcaaa acagccttgc caaaaaaaaa aaaaaaaa
//
