LOCUS       NM_001033246            4117 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 110 (Ccdc110), mRNA.
ACCESSION   NM_001033246 XM_134148 XM_896745 XM_906492 XM_919874
VERSION     NM_001033246.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4117)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 4117)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114558.18.
            
            On Feb 12, 2019 this sequence version replaced NM_001033246.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK132742.1, AK161248.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-96                AC114558.18        235291-235386       c
            97-243              AC114558.18        234841-234987       c
            244-299             AC114558.18        231035-231090       c
            300-365             AC114558.18        230647-230712       c
            366-476             AC114558.18        229363-229473       c
            477-2583            AC114558.18        226435-228541       c
            2584-4117           AC114558.18        224399-225932       c
FEATURES             Location/Qualifiers
     source          1..4117
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 25.92 cM"
     gene            1..4117
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /note="coiled-coil domain containing 110"
                     /db_xref="GeneID:212392"
                     /db_xref="MGI:MGI:2685018"
     exon            1..96
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..2633
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 110"
                     /protein_id="NP_001028418.1"
                     /db_xref="CCDS:CCDS22282.1"
                     /db_xref="GeneID:212392"
                     /db_xref="MGI:MGI:2685018"
                     /translation="MSPGYLPAPKAVLGSVPEKHLAEEDEVDSILLSASKILNSSEGV
                     KESGGNEPEYGCASEPENQIQPQSALKVLQHQLESFQALRMQTLQNVSMVQSEISEIL
                     NKSIVEVETPQFNSEKSLVFSMHPEKDLPNETQEEIPSTKTLHSMGETFSSNSDTGLP
                     QGTDIPPQIQVKDMLALQGLRTTADNSPPKKAMNTSEQPSATKSFSLYQFLPQGPQTA
                     VPQAAPVILDKSTITTPFPKHGFCANLDDICHSIKHMKEELQKSHDKELALTSELHTF
                     QADASTQGHHKHEPFPMHSSKLNFIQQENMEGNLSEDMKSKRISELEALVSKLLPLRD
                     TVSKLHVNFCRKCKKLSKSEVYRGKKNEKNKDIPITSKNIMDLKFHSRAPRYTLSVLD
                     LGKHKIKDKEGQAFIVSQGPATLENEKLPKGKFIPEQCVPKQSVAKIHYLQNYLKESL
                     QNQKKMTELENENLALKTKMKPLVFTAQSLIQKVEAHEKQLKSLAEEKSALQSKLSKA
                     EEENKDCLRELKKIVSTYNVLGGQHKMLEEKNSQLSLEKQQMLETIDHLKSKEHKSQS
                     DMAVLQNENSRMNIEIEAMKTSMLLVQDEREMLEKETYQLLKDKSTLESDLKESKLEI
                     LQLKEKERLIKAEQESLLHSLDTAKAEKLSLEATLQESTSTRQKLERKLVDIQAYQSA
                     AEEKFLKEIKSAKSETSIYKNNLAEISKECEILSKMVMEIKADNQILKEELKKHSQEN
                     TKFENSISRLTEDKILLENYVRSIENEKDTLEFEMRNLQRDYLSLSDKVSSQNNSASK
                     STYISRREKLYFDNYDAYEDASSLRNRPVASDLKGIPHKLYQRLPSKICK"
     exon            97..243
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /inference="alignment:Splign:2.1.0"
     exon            244..299
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /inference="alignment:Splign:2.1.0"
     exon            300..365
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /inference="alignment:Splign:2.1.0"
     exon            366..476
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /inference="alignment:Splign:2.1.0"
     exon            477..2583
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /inference="alignment:Splign:2.1.0"
     exon            2584..4117
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2629..2634
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /note="hexamer: AATAAA"
     polyA_site      2646
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /note="major polyA site"
     regulatory      2691..2696
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /note="hexamer: AATAAT"
     polyA_site      2712
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
     regulatory      3179..3184
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
                     /note="hexamer: AATAAA"
     polyA_site      3201
                     /gene="Ccdc110"
                     /gene_synonym="Gm172"
ORIGIN      
        1 actaggcaac gggatgctgc ggctagaagc ggcagagctg aatgcttggg gcaaggcagt
       61 tggtggagag atcttaagcg acagaaatga gccccggcta ccttccagct ccaaaagctg
      121 tgctcgggtc tgttccagag aagcacctcg cggaagaaga tgaagttgac tccattctcc
      181 tttcagcatc caagatcctg aattcctctg agggggtaaa ggaaagcggg ggcaatgaac
      241 cagaatatgg ctgtgcgtca gaaccagaaa atcaaatcca accacaatca gcactgaaag
      301 tcctacaaca tcagctggag tcgtttcagg ctctgcggat gcagactcta cagaacgtca
      361 gcatggtaca gtctgaaatc agtgaaatac tgaacaaaag tattgttgaa gtagaaaccc
      421 cacaatttaa ctcggaaaaa agtctagtat tcagcatgca tcctgaaaag gatttgccta
      481 acgagacaca agaagaaata ccttccacca agactctcca ttcgatggga gagaccttca
      541 gtagtaacag tgacactggt ctccctcagg gcacagatat tccaccccag attcaggtca
      601 aggacatgct agctctgcag ggcctgagaa ctaccgctga taactcacct cccaagaaag
      661 ctatgaacac ttcggagcag cccagcgcca caaagagttt cagcctctat cagtttctac
      721 ctcagggtcc tcaaacagcg gtgccccaag ctgctcccgt gattctggat aaatccacca
      781 tcaccacccc tttcccaaag catgggttct gtgcaaactt agacgacatc tgccactcga
      841 tcaagcacat gaaagaggag cttcagaagt cacacgacaa ggagctggca ctcacaagtg
      901 aactccacac tttccaggca gacgcgagta ctcaaggtca ccacaaacat gagccgtttc
      961 ccatgcatag ctcaaaactt aattttatcc agcaagaaaa catggaaggt aacttaagtg
     1021 aagacatgaa atcgaagaga atttccgaat tagaggcctt agtgagcaaa ctgctcccac
     1081 tcagggacac ggtgtcaaaa ctgcatgtga acttttgtag gaaatgtaaa aagttatcta
     1141 aaagtgaagt ataccgtggg aagaagaatg agaaaaataa agacatccct atcaccagca
     1201 agaacattat ggatttaaag ttccactccc gagctccaag gtacactctg tcggtcctgg
     1261 acctagggaa acacaaaata aaagacaaag aaggccaagc gttcatagtc agccaaggac
     1321 ccgcaacgct tgaaaacgag aagttaccca aaggcaagtt catcccagag cagtgcgtcc
     1381 ccaagcagag cgtcgccaaa attcattacc tacagaatta cctaaaagaa tccttgcaga
     1441 atcagaaaaa gatgaccgaa ctggagaacg aaaacctagc ccttaagacc aaaatgaagc
     1501 cccttgtgtt caccgcacaa tccctgatcc agaaggtgga agcccacgag aagcaactga
     1561 agtctctggc tgaagaaaag agtgctcttc agtccaagtt aagcaaagca gaggaagaga
     1621 acaaagactg cctcagggaa cttaagaaaa tcgtcagcac ttacaacgtc ctcggaggcc
     1681 aacacaaaat gctagaggag aaaaatagtc agctctctct ggaaaagcaa cagatgctgg
     1741 aaacgataga tcacctgaag agcaaggaac acaagtccca aagtgacatg gccgtcctcc
     1801 aaaacgaaaa cagtagaatg aacatagaaa tagaagccat gaaaacaagc atgctgttgg
     1861 tacaagacga aagggaaatg ctagagaaag agacgtacca gctcctgaaa gacaagagca
     1921 cgctcgagag tgacctgaaa gagagcaagc tggagatcct gcagctgaaa gaaaaggaga
     1981 gactgattaa agcggagcag gagtcgcttc ttcacagtct agacacagct aaagcggaga
     2041 agctgagtct ggaggcgaca ctgcaggagt ccacttccac cagacagaag ttggaaagga
     2101 agctcgtgga tattcaagcc taccagtcag ccgcggagga gaagttcctg aaagaaatca
     2161 agagtgcaaa gtcggagaca agcatctaca aaaacaactt ggccgaaatc agcaaggagt
     2221 gtgagatctt gtccaaaatg gtcatggaga ttaaggcgga taaccagatt ctgaaagaag
     2281 aactcaagaa acacagtcaa gaaaacacca agttcgaaaa tagcatcagt cggctcaccg
     2341 aagacaagat acttctggaa aactacgtga gaagcataga aaatgagaaa gacaccctgg
     2401 aatttgagat gcggaatctt cagcgagact acttgagttt aagtgataaa gtctccagtc
     2461 agaacaacag cgcatcaaaa tcaacctata tttcaagacg agaaaaactc tacttcgata
     2521 actacgatgc ctatgaagat gcttccagtc ttaggaatcg gcctgtggct tctgacttga
     2581 aaggaatacc acataaactg tatcaacggc ttccatccaa gatatgtaaa taaatttcaa
     2641 aagaaatcag tgttttaaaa acattttttc caagtaattt tcctccataa aataatattg
     2701 aagtaacttt tacctctggt tccaaaggtc tcatgaatga ttaaactggt tttaaagtag
     2761 atattagaat tacattagag agtcaagaac tatggaaaag gtgttatcaa actctaagct
     2821 cacatgttgg tctttcatgg tttcacaaaa gctaaaggga gaatgaagct ccgggtcaga
     2881 gagtaagggg agctcgctgc tactcaaagc acatatgcat ttgtccttca cacatattcc
     2941 cacaacatag agagccacat agaaggttac attgtagagg ataaacctgt cctgtctcca
     3001 aagagctggt gttgtgaaat cagacttacc ctttgttgta ctggatcaaa ctatccaatc
     3061 tattttggct ctgtaattcc ttgttgagtt ctgtcagatg cttttatcca ttacttgaaa
     3121 caattttttt ctccttagta cattgttata ttaattttga cacacctccc attcctggaa
     3181 taaagcctac caggcaggtt actattcttt tcatgtcaat tcctgggctt aactttacat
     3241 ccgccattta gaatttcttc tacaaaagga cattggttta tatatttcca ggcaaggact
     3301 ttgtatggtt ttagtaatag caaactcgtg gcctgtaaaa tgccaggtgt atccttccat
     3361 gcttactgca atagctcagt gacagactat gcctggaatg tggtggccgc ttggcatttg
     3421 tagggaatgg tgagtgtata ccagagagtc tcacgatgga cagtcacttg gtaagctaga
     3481 gatatagaac gcactgaaca tcgaaaactt tagacaaggt ggacttgtgt gtctcttgct
     3541 aatcaggaag gattgcaaat ttcctttgaa gatctttaaa tgaaataatt attgttttct
     3601 acccagctcc tatagatttc taatcaatgt ccttgataag catgctacag ggaagcaggc
     3661 cttctcagtt ttttttttct ttcttctgtc aactagtttg catcttatat ttgattccct
     3721 acaagtaaat aaattgcact accctgatct ctgattttga caggggatac tgtaacttga
     3781 aaacatttag taatcctctt aactgttgaa aactgaagaa tttttccagg gaacacaata
     3841 taaattgctt gatagctcta agcagccgga atgcctggct tcccacttct ggttgtactg
     3901 ccttgaacat gagattcaac ctctctctgc ctccatctcg tcactggtta cgtgaacacc
     3961 aaatggttaa ccaccacaaa cacatttaat agaatggtac atagaatggc tcccaacgca
     4021 taataagcat taactattag ttcatttttt tgatgtttta aacaaaatac catcattgga
     4081 aatacagtga taaataataa aaagtcagat taataaa
//
