LOCUS       NM_001037913             814 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus coiled-coil domain containing 107 (Ccdc107), mRNA.
ACCESSION   NM_001037913 XM_889266 XM_898436
VERSION     NM_001037913.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 814)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 814)
  AUTHORS   Rosenbluh,J., Nijhawan,D., Chen,Z., Wong,K.K., Masutomi,K. and
            Hahn,W.C.
  TITLE     RMRP is a non-coding RNA essential for early murine development
  JOURNAL   PLoS One 6 (10), e26270 (2011)
   PUBMED   22039455
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL732506.10.
            
            On Apr 6, 2011 this sequence version replaced NM_001037913.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC027414.1, BY703412.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-172               AL732506.10        107526-107697
            173-324             AL732506.10        107769-107920
            325-385             AL732506.10        109356-109416
            386-476             AL732506.10        109503-109593
            477-589             AL732506.10        109670-109782
            590-814             AL732506.10        109858-110082
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 23.04 cM"
     gene            1..814
                     /gene="Ccdc107"
                     /gene_synonym="1110032O22Rik"
                     /note="coiled-coil domain containing 107"
                     /db_xref="GeneID:622404"
                     /db_xref="MGI:MGI:1913423"
     exon            1..172
                     /gene="Ccdc107"
                     /gene_synonym="1110032O22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             67..795
                     /gene="Ccdc107"
                     /gene_synonym="1110032O22Rik"
                     /note="coiled-coil domain-containing protein 107"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 107
                     precursor"
                     /protein_id="NP_001033002.1"
                     /db_xref="CCDS:CCDS18097.1"
                     /db_xref="GeneID:622404"
                     /db_xref="MGI:MGI:1913423"
                     /translation="MEGAGPVLSILGLLLVSAPFGVLGERPSADLGAHPERGSQVSPG
                     TTEPRRQPPPKDQRERARAGSLSLGALYTAAVVAFVLFKCLQGPDEAAVLREEKNKKK
                     SSQSEQQLVQLTQQLAQTEQHLNHLMTQLDPLFEQVTTLVGTQRELLDTKLKTIHHLL
                     QDCQPGTGVEVPEPEASIPFTEDLGKEDQEAGNSQAWEEPITWSPETRNLAPSWEVEQ
                     GLRRRWHKTVTKGPAVNGEQPLKV"
     exon            173..324
                     /gene="Ccdc107"
                     /gene_synonym="1110032O22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            325..385
                     /gene="Ccdc107"
                     /gene_synonym="1110032O22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            386..476
                     /gene="Ccdc107"
                     /gene_synonym="1110032O22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            477..589
                     /gene="Ccdc107"
                     /gene_synonym="1110032O22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            590..814
                     /gene="Ccdc107"
                     /gene_synonym="1110032O22Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      794..799
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc107"
                     /gene_synonym="1110032O22Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      814
                     /gene="Ccdc107"
                     /gene_synonym="1110032O22Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcactacggc cggaggccca gcgctggaac gcggggtacc cggcgtgcga ttctggtggg
       61 ccaggcatgg agggcgctgg ccccgtgttg agtattctgg ggctgctgct tgtgtctgcg
      121 ccttttggag tccttgggga gcgccccagc gccgatctgg gggcacaccc agaacggggc
      181 tcccaggtca gtccgggaac caccgaacct cggcggcagc cgccacccaa ggatcagcgc
      241 gagcgagccc gggccggatc gctgtctttg ggcgctctgt acaccgcggc cgtcgtggct
      301 tttgtgctgt tcaagtgttt gcagggccca gatgaggctg ctgttctcag agaggaaaaa
      361 aacaagaaga aatcctcgca gtcagagcaa cagctggtgc agctgacaca acagctggcc
      421 cagacggagc agcacctgaa ccacctgatg acacagctgg atcccctttt tgaacaggtg
      481 acgactttgg ttggaaccca gagggaactt ctagacacaa aactaaagac catccaccac
      541 cttctacaag actgccagcc tggcacagga gtggaagttc cagaaccaga ggccagcata
      601 ccctttactg aggacctggg gaaagaagac caagaagctg gaaacagtca ggcctgggaa
      661 gagcccataa cctggagccc agaaacacgg aacctagctc cttcctggga ggtggagcag
      721 gggctgagga gaaggtggca caagacggtg acaaagggtc cagcagtaaa tggggaacaa
      781 ccactgaagg tttagtaaaa agagtcccct cgta
//
