LOCUS       NM_001033533            2309 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus coiled-coil domain containing 102A (Ccdc102a), mRNA.
ACCESSION   NM_001033533 XM_150129
VERSION     NM_001033533.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309)
  AUTHORS   Chao,R., Nevin,L., Agarwal,P., Riemer,J., Bai,X., Delaney,A.,
            Akana,M., JimenezLopez,N., Bardakjian,T., Schneider,A.,
            Chassaing,N., Schorderet,D.F., FitzPatrick,D., Kwok,P.Y.,
            Ellgaard,L., Gould,D.B., Zhang,Y., Malicki,J., Baier,H. and
            Slavotinek,A.
  TITLE     A male with unilateral microphthalmia reveals a role for TMX3 in
            eye development
  JOURNAL   PLoS One 5 (5), e10565 (2010)
   PUBMED   20485507
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB613877.1, BC107374.2 and BF020220.1.
            
            On Nov 28, 2009 this sequence version replaced NM_001033533.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK165668.1, AK144530.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164137, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-543               BB613877.1         2-544
            544-1981            BC107374.2         1-1438
            1982-2309           BF020220.1         1-328               c
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 46.99 cM"
     gene            1..2309
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /note="coiled-coil domain containing 102A"
                     /db_xref="GeneID:234582"
                     /db_xref="MGI:MGI:2686927"
     exon            1..117
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /inference="alignment:Splign:2.1.0"
     exon            118..843
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /inference="alignment:Splign:2.1.0"
     CDS             262..1911
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 102A"
                     /protein_id="NP_001028705.2"
                     /db_xref="CCDS:CCDS22551.1"
                     /db_xref="GeneID:234582"
                     /db_xref="MGI:MGI:2686927"
                     /translation="MSHGPSPRLAESPQLSKSSLLTILGSPSPERMGPADSLPPTPPS
                     GTPSPGPPPSLPLTAPALLADGDWESREELRLRELEEARARALQMEKTMRWWSDCTAN
                     WREKWSKVRAERNRAREEVRQLRQRLDTLTKELAGARRERQEAQGECEARGRELARLR
                     GVHSAADKTHDGPEPEREQEPVRDIGAERPPGSQELDLVESLLKSRPEEPEGCWDACS
                     VAAGGPRVSSGRQDRNRLPWEDTASTEEDASKLTALRLRLDESQKVLLKEREDKLALS
                     KNIEKLEGELSQWKIKYEELSKTKQEMLKQLSILKETHQDELGRMSEDLEDELGARSS
                     MDRKMAELRGEMERLQAENAAEWGRRERLETEKLGLERENKKLRAQVGDLEEALARRR
                     RQNASALDCDLRASQAALFEKNKELADLKHVHGKLKKQFQEKVAELAHANRRVEQHET
                     EVKKLRLRVEELKKELAQAEDELDEAHNQARKLQRSLDEQTEQSENLQVQLEHLQSRL
                     RRQQQNAPLFGKIRSTRFGTEEAGDGASDLDEDEDLQIQVA"
     exon            844..1070
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /inference="alignment:Splign:2.1.0"
     exon            1071..1179
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /inference="alignment:Splign:2.1.0"
     exon            1180..1296
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /inference="alignment:Splign:2.1.0"
     exon            1297..1506
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /inference="alignment:Splign:2.1.0"
     exon            1507..1677
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /inference="alignment:Splign:2.1.0"
     exon            1678..1781
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /inference="alignment:Splign:2.1.0"
     exon            1782..2304
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2281..2286
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /note="hexamer: AATAAA"
     polyA_site      2304
                     /gene="Ccdc102a"
                     /gene_synonym="Gm586"
                     /note="major polyA site"
ORIGIN      
        1 aggaggagga gacttggcgg ccctcccccg gcctcccgac ggccgccgca gccagccccg
       61 cgcccgctcc acccagagca gcagttcgga cgtccggaat cccagccccg gcccgaggtc
      121 tgaagaggca ccccagagta tcctagagag cagtggatcg aggcgtccat cacacgcagt
      181 gagatcatgt tagatctctg tcctacgcgc cgtccttgag cctagcccca agttcgcacc
      241 caaggccagc ccagcctcac tatgagccac ggtccgagcc cgcggctggc tgagtctccg
      301 cagctgtcca agagcagcct gctcaccatc ctgggcagcc cgtccccgga gcgcatgggc
      361 ccggccgact cgctgccacc cacgccgcct agcggcaccc cgtcaccagg accgccaccc
      421 tcactaccct tgactgctcc cgctctgctg gccgacggcg actgggagag ccgcgaggag
      481 ctgcggctgc gggagctgga ggaggcgcgc gcgcgagcct tgcagatgga gaaaacaatg
      541 cgctggtggt cggactgcac ggcgaactgg cgcgagaagt ggagcaaggt gcgcgccgag
      601 cgcaaccgtg cgcgggaaga ggtgcgccag ctgcgccagc gcctggatac gctcaccaag
      661 gagttggcgg gcgcgcgccg tgagcgccag gaggctcagg gcgagtgcga ggcgcgcggc
      721 cgcgagctgg cccggctgcg gggagtgcac agtgcggccg acaagactca cgacggtccg
      781 gagcccgaac gcgagcagga gccggtgcgc gacatcgggg cggaaaggcc gcctggcagc
      841 caggagctgg acctggtaga gagcctgctg aagagcagac cagaggagcc tgagggctgc
      901 tgggatgcct gcagtgtagc agcagggggc cctcgggtca gctcaggacg ccaggatcgc
      961 aaccgcctgc cctgggagga cacagccagt acagaagagg atgcctccaa gttgactgct
     1021 ctgcgcctac ggctagatga gtcccagaaa gtgctcctca aggagcgaga ggataagctg
     1081 gctctgagca aaaacatcga gaagctggag ggggagctta gccaatggaa gatcaaatac
     1141 gaggagttga gcaagaccaa gcaggagatg ctcaaacaac tcagcatcct aaaggagacg
     1201 caccaggatg agttgggccg catgtcggaa gacctggagg atgagctggg cgcacgctct
     1261 agcatggatc gcaagatggc tgagctgagg ggtgagatgg aaaggctcca ggcagagaat
     1321 gcggccgagt ggggccgcag agagcggctg gagacagaga agctgggcct ggaacgggag
     1381 aacaagaagc tgcgcgcaca ggttggagac ctggaggagg ctctggcccg cagacggcgg
     1441 cagaatgcca gtgccctgga ctgtgacctg agggccagcc aggctgctct tttcgagaag
     1501 aacaaggaac tggcagatct gaagcacgtg cacggcaaac tcaagaagca gtttcaagag
     1561 aaggtggccg agctggcaca cgccaatcgg cgcgtggagc agcacgagac ggaggtcaag
     1621 aagctgcggc tgcgggtgga agagctcaag aaagagctgg cccaggcaga ggatgagctg
     1681 gacgaggccc acaaccaggc acggaagctg caacggtccc tggacgagca gacagaacag
     1741 agcgagaacc tacaggtgca gctggaacac ctgcagtcca ggctccgcag gcagcagcaa
     1801 aacgcacccc tttttgggaa gattcgtagt acccgatttg gcaccgagga agccggagac
     1861 ggagccagcg acctggatga ggatgaggac ctgcaaatcc aggtggccta ggacatccag
     1921 ggtggaagag gaccgacccc aaagcacaga tgcccagcgg agcatcctct caaaccctga
     1981 cagccatctt tcgctgtctg tacgcacttg ggttccaccc ccctgcttca aaccacttcc
     2041 ttctctccca ggaaagcggg agtttcacct atcacacccc tgtgaagggg gagcctgttg
     2101 gatatgtata ttgtatatat gcccagggtt gcttggaccc aactgacagc ccagcaccca
     2161 gatcttaaga ccccacctgc acaagacttc gtgcagagat ggaacatggt gagggaggct
     2221 tggtggtctg gaaggggcta ttcatagtaa gataccatga acatgaactc agacttttgt
     2281 aataaatgga cttgaagctc tcaaaaaaa
//
