LOCUS       XM_036161177            5463 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus collagen and calcium binding EGF domains 1
            (Ccbe1), transcript variant X3, mRNA.
ACCESSION   XM_036161177
VERSION     XM_036161177.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5463
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..5463
                     /gene="Ccbe1"
                     /gene_synonym="4933426F18Rik; 9430093N24Rik; mKIAA1983"
                     /note="collagen and calcium binding EGF domains 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 2 ESTs, 507 long SRA reads, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:320924"
                     /db_xref="MGI:MGI:2445053"
     CDS             267..1031
                     /gene="Ccbe1"
                     /gene_synonym="4933426F18Rik; 9430093N24Rik; mKIAA1983"
                     /codon_start=1
                     /product="collagen and calcium-binding EGF
                     domain-containing protein 1 isoform X2"
                     /protein_id="XP_036017070.1"
                     /db_xref="GeneID:320924"
                     /db_xref="MGI:MGI:2445053"
                     /translation="MGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAG
                     TCCATCKEFSQMKQTVLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGG
                     QGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPG
                     RHGSKGERGAPGPPGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPL
                     PQEFSSYPETLDFGSGDDYSRRTEARDPEAPRNFYP"
ORIGIN      
        1 aaacctgttg actttacagg aaaaaatgct gcaaaggata taaatttgtt cttggacagt
       61 gtattccaga agattatgac atttgtgccc aagctccctg tgaacagcag tgcacggata
      121 acttcggccg tgtgctgtgc acgtgctacc cgggataccg atatgaccgc gagagacacc
      181 aaaagcggga gagaccgtac tgtctggata tcgatgaatg tgccaccagc aataccactc
      241 tctgtgcaca tatctgcatc aacaccatgg gcagctacca ctgtgagtgt cgggagggct
      301 acatccttga ggacgatggg aggacctgca caaggggaga caaatacccc aatgacactg
      361 ggcatgaaga gaagtccgag aatgaggtga aagccgggac ctgctgcgcc acatgcaaag
      421 agttctccca gatgaagcag accgtgctgc agctgaaaca gaagatggcg ctgctcccca
      481 acaatgccgc tgaactgggc aagtatgtca atggtgacaa ggtactggcc tcaaacgcct
      541 accttccagg acctcctggc ctgcctgggg gacagggccc accaggctca ccaggaccca
      601 aggggagccc tggattcccc ggtatgccag gccctcctgg acagccaggc ccacggggct
      661 caatgggacc tatgggacct tcccctgacc tgtctcatat taagcaaggc cggaggggcc
      721 ccgtgggccc accaggagca ccaggaagac acggctccaa gggggagaga ggagcacccg
      781 gacccccggg gtctccggga cccccaggtt ctttcgactt cctgctgctt gtgctggcgg
      841 acattcgaaa tgacatcgca gagctgcagg agaaggtgtt tggacaccgg actcactctt
      901 ccgccgagga cttcccccta cctcaggaat tctccagcta cccagagacg ctggactttg
      961 gctctggaga tgactactcc agaagaactg aagcaaggga ccccgaggcc ccaagaaatt
     1021 tttatccata gcacatccca tatcctcacg ccaccagaag agaagcatgc cttcgacctt
     1081 ccccttactc tgtttccaaa cccggttttc caagtttcct gtgcatcaca ctagcaacag
     1141 gaagatgtga tgggttaacg tgctgttctt gaagagccaa tgggtggttg acatcaagac
     1201 tttcttcaac gtccgatttt ttcaagagct tttgggtttc tgagttcatc attccacaga
     1261 atcttcaact ttggcagagt gcaaaagagg ggaaaatggc accgtgggtt cttaggagtg
     1321 taaggttcct tctaaaaaga aaataatgtt caaatgcttg actattcatt ccctactgtc
     1381 aggagtaagg cttttagggt gggggtgggg gtggaggggc atggaaggag caaccatgga
     1441 gaataacatt gatagaaaat gattttcctt agcaatatcc cagatttcaa attctgcatc
     1501 ctattttcca acttgatggg ggtttttttt tgtttgtttg ttttggtttg gttttttgtt
     1561 ttttgggggt gtttgtttgt ttgtttgtct ttaaatttgg ttacagaaac aagagattgg
     1621 aaagaatgtg ttcagagaga tagagaatta gccttatatt tcctgtctca taggttgccg
     1681 aatttagaat tcagatacga cagtcattga ttcgtgcaaa tcctatgtgg aggagggagt
     1741 ttgtttgtaa gggcttgatc atgttttcta gggagcttgg ggtgaggaaa cactctgtgc
     1801 atactagaac agagggctcc tggagaccag gacgattgaa gactacatgg tcaaaagcat
     1861 tgtcctgctc catacatgtt gatgatttgt gaaataagat ggctgacatt taagaagaag
     1921 tacaagatgc cctggcactg acagggttgc cagatgtgcc agcaaggcct gatccaggct
     1981 gaatcaaggc tggagggaaa tcactgccct ggaatcttag ccaaggatgt caaggggaca
     2041 ttgagaagtg cttcactaaa atcagattaa tcagaagcag attaatctac tcttaagaga
     2101 tttgaagttc tcaccagggc acacttggaa cagcatacag ctgagaggtc tctgagatag
     2161 agaaggagga ggagtttttg ataaattgga ataattttcc actatttgcc ccctgatttg
     2221 gttagaatcc ctgttgttct gggtgtcctt gactttttgt cctgggccac aaggaaacgg
     2281 cttggaggcc agcacatttc ccaatgtctc cctaagtccc ttcttggagt atgtctagat
     2341 ccccagggaa tcatgttccc agaaaggagc aagaggccag caggttcctt cttggtatct
     2401 ctgggttctt gtttcaggga tctgcttccg ggctccttag tgaacacttt ctccttgggt
     2461 gtgcagcagg ctccgtgatc ttgctcacat ggttgcccac accagggtcc cagtttgcta
     2521 tcctgcagtg cccccttata tttctaagaa gtttgagatt gcattgatct tttccctata
     2581 tcacttaagc ctccatcgtc ttcccacacc tactgtgaca gcttgttgga ggaaacagct
     2641 attggtttgc atgacactgc atccaccatc cactcttctt tctgagcaat aagaaggggc
     2701 tctgtctaca gagccagcca gagcctcgtg ggctttcact tcccctctcc cacctcccta
     2761 ccctcatccc tctctcctgg ttctcttcct tttccttttt tttctctctt cctctcctcc
     2821 tcttttgctc cttctctcct tcatttcctc tacccctatc ctagcttccc tgcctttcca
     2881 cctctccttt cttacttgct tccttcctcc ctccttccct ccctcccttt ctccttctct
     2941 ccctccatct ttcttccttt ctactccctc cctcccttcc tacctaccta cttccttcct
     3001 tccctttttt cttccttagt tccctctctc tgctccctcc ctccttccct ccatgcttgc
     3061 ctgcctatct tcctacccag ttagaaaggc aggattccca cacactccca cccaaatccc
     3121 cagtggctgt ccatcagcag tcctgatgaa ggcaagcaca cacttgcatc gcttgcttgc
     3181 tgtctcaccc tccttccccc ttcagtctct cctgaacctg tgcatcacca cagatagcct
     3241 tgtcaactgt ggcttcctga agagatggat gcaaccgcag tcaagtgcca cctggaatct
     3301 atttagtgct tgcctgctta tagaacccat cttttaaagg gtgtggatgg atgaattctc
     3361 aaaactatgc acaggctctg tgagcaataa ttatgtccat ctttttttat gaggaatttt
     3421 ataactactt tttatgtcta ctttttttag acagtgaaat gtatgtagaa atataatctt
     3481 tattgccaaa tgctggtaaa acgcgagcac actccatgct tggctggagg ccaggataat
     3541 gtactgaaag aatgaagaga aagtcataat atctgggatt catgagtctg tctagataat
     3601 tacctccagg aaaacataat agcctatatt ttgtgatctc aatatgccat gtcaatttag
     3661 ataatcgtta ctcctcagat tttcaaaaca tggaatacta actaactaca agaccaacgc
     3721 atgtcctcta cttattcaaa tcatggattt ttagtgataa agcattattg ctcccatatc
     3781 ttttagttgt ggacagaaaa aaaaatcaaa gcttttctgt ctaaacaaat ttctgctcaa
     3841 aatatcatag gaaggccttt gggaggaagg acagttcaga acaaatttac cgagtcactt
     3901 catatctcac agggaaaata ttttagtttt ttatacgccc ttcaacactt tagtagaaat
     3961 ggtcaacttt tctaatattt ccactggtta agacttggtt atgaattgcc tctgtgttta
     4021 taaagcaatg agaataaaat ttcactgaaa ataatataaa gaagactttc attttagttt
     4081 aggaaaactg aattttccaa ttccagaagg aaaaaaataa ccagttttcc tgtgccagtt
     4141 aagtgttagg agctaggtgt gatggtggac acctgtaatc ccagcacctg agaagcacag
     4201 ctaggcagat caggagttca aggtcagcct cagctacata acaagtgtga ggccagcctg
     4261 ggctatctga gagtctatct caaaataata atgatgatga tgataatgtg atgataataa
     4321 agaataataa ttagcagagg actaaagaga tggctcagag gttaaggatt cttgctgctc
     4381 ttccagagat acagagctca gtttccagct cttgcacagg cagctcacaa catctgtaaa
     4441 cacaggtcca ggtgatctgg cgccctcttc tggcttccat agtacctgca ctcacatgca
     4501 cacacacaca tagatataca aacacataat tacaaataaa gtctttttta aaggagtggg
     4561 tacaaagagg atgctgcctt ttcttgcttt ctatgttact ttccaatact tgctacggaa
     4621 ttaactaaag tcatattgct gtgtggagcc aggccactat ccagcaggaa aattataagt
     4681 gcccagtgat cttggaagaa gttttggccc atcaaaggcc aggtgcagag caccctggta
     4741 gacccaggta agtcatgttc cctttccaag gttctgaaca tccttggcct tggaagtacc
     4801 actatcaggc acattggcac aaaacttctt catgaccatc catcaaactt taccttgagg
     4861 tctcaggaag ccacccccct atcttatttt gagcatcatt tttcattttc ctcctcttcc
     4921 aaattcaaac agacagcctc aggagcctcc ttctgcaagc ttatcttcca gacaactgtt
     4981 ctaaaaggga aagctattgg ctggaatctg agccatacaa ttagtaatat agaggcttct
     5041 gttctattca gggaaataca tgggtcattt cctgatgcag caatcatgta tgtttcacaa
     5101 catgtcaaaa ataattttct ctttggattt ttcaagggcc gtcattgtta aagctgaaat
     5161 ggtgtgcttt atatactctt cctacaaatg ttaccatcag agaggaacca tgaaaaagga
     5221 catatgggct atccatccct cagagagctc agtatgtttt gtccgattcc cagagcttga
     5281 tccctgagtg gttcttgagt ctgtttttat ttctcagtca ctggtcatat atttcagtat
     5341 ctctgtgcat tatttatatc agatcttgta acagtcaaac tgatattcca acagtcatgg
     5401 atgtaatact aggaagtgcg tttgtatgac tgtatatgct taataacaaa gttatttttc
     5461 tta
//
