LOCUS       NM_175631               2799 bp    mRNA    linear   ROD 08-FEB-2025
DEFINITION  Mus musculus cerebellin 4 precursor protein (Cbln4), mRNA.
ACCESSION   NM_175631
VERSION     NM_175631.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2799)
  AUTHORS   Tworig,J.M., Morrie,R.D., Bistrong,K., Somaiya,R.D., Hsu,S.,
            Liang,J., Cornejo,K.G. and Feller,M.B.
  TITLE     Differential Expression Analysis Identifies Candidate Synaptogenic
            Molecules for Wiring Direction-Selective Circuits in the Retina
  JOURNAL   J Neurosci 44 (18), e1461232024 (2024)
   PUBMED   38514178
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2799)
  AUTHORS   Song,J.H.T., Ruven,C., Patel,P., Ding,F., Macklis,J.D. and Sahni,V.
  TITLE     Cbln1 Directs Axon Targeting by Corticospinal Neurons Specifically
            toward Thoraco-Lumbar Spinal Cord
  JOURNAL   J Neurosci 43 (11), 1871-1887 (2023)
   PUBMED   36823038
REFERENCE   3  (bases 1 to 2799)
  AUTHORS   Pauli,J.L., Chen,J.Y., Basiri,M.L., Park,S., Carter,M.E., Sanz,E.,
            McKnight,G.S., Stuber,G.D. and Palmiter,R.D.
  TITLE     Molecular and anatomical characterization of parabrachial neurons
            and their axonal projections
  JOURNAL   Elife 11, e81868 (2022)
   PUBMED   36317965
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2799)
  AUTHORS   Dai,J., Liakath-Ali,K., Golf,S.R. and Sudhof,T.C.
  TITLE     Distinct neurexin-cerebellin complexes control AMPA- and
            NMDA-receptor responses in a circuit-dependent manner
  JOURNAL   Elife 11, e78649 (2022)
   PUBMED   36205393
  REMARK    Erratum:[Elife. 2023 Nov 09;12:e94305. doi: 10.7554/eLife.94305..
            PMID: 37943030]
            Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2799)
  AUTHORS   Liakath-Ali,K., Polepalli,J.S., Lee,S.J., Cloutier,J.F. and
            Sudhof,T.C.
  TITLE     Transsynaptic cerebellin 4-neogenin 1 signaling mediates LTP in the
            mouse dentate gyrus
  JOURNAL   Proc Natl Acad Sci U S A 119 (20), e2123421119 (2022)
   PUBMED   35544694
  REMARK    GeneRIF: Transsynaptic cerebellin 4-neogenin 1 signaling mediates
            LTP in the mouse dentate gyrus.
REFERENCE   6  (bases 1 to 2799)
  AUTHORS   Miura,E., Iijima,T., Yuzaki,M. and Watanabe,M.
  TITLE     Distinct expression of Cbln family mRNAs in developing and adult
            mouse brains
  JOURNAL   Eur J Neurosci 24 (3), 750-760 (2006)
   PUBMED   16930405
REFERENCE   7  (bases 1 to 2799)
  AUTHORS   Nef,S., Schaad,O., Stallings,N.R., Cederroth,C.R., Pitetti,J.L.,
            Schaer,G., Malki,S., Dubois-Dauphin,M., Boizet-Bonhoure,B.,
            Descombes,P., Parker,K.L. and Vassalli,J.D.
  TITLE     Gene expression during sex determination reveals a robust female
            genetic program at the onset of ovarian development
  JOURNAL   Dev Biol 287 (2), 361-377 (2005)
   PUBMED   16214126
REFERENCE   8  (bases 1 to 2799)
  AUTHORS   Bouma,G.J., Albrecht,K.H., Washburn,L.L., Recknagel,A.K.,
            Churchill,G.A. and Eicher,E.M.
  TITLE     Gonadal sex reversal in mutant Dax1 XY mice: a failure to
            upregulate Sox9 in pre-Sertoli cells
  JOURNAL   Development 132 (13), 3045-3054 (2005)
   PUBMED   15944188
REFERENCE   9  (bases 1 to 2799)
  AUTHORS   Bouma,G.J., Hart,G.T., Washburn,L.L., Recknagel,A.K. and
            Eicher,E.M.
  TITLE     Using real time RT-PCR analysis to determine multiple gene
            expression patterns during XX and XY mouse fetal gonad development
  JOURNAL   Gene Expr Patterns 5 (1), 141-149 (2004)
   PUBMED   15533830
REFERENCE   10 (bases 1 to 2799)
  AUTHORS   Menke,D.B. and Page,D.C.
  TITLE     Sexually dimorphic gene expression in the developing mouse gonad
  JOURNAL   Gene Expr Patterns 2 (3-4), 359-367 (2002)
   PUBMED   12617826
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL929097.12.
            
            On May 2, 2007 this sequence version replaced NM_175631.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK032621.1, BC094540.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164141
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1450              AL929097.12        75748-77197         c
            1451-1567           AL929097.12        72705-72821         c
            1568-2799           AL929097.12        70067-71298         c
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 94.74 cM"
     gene            1..2799
                     /gene="Cbln4"
                     /note="cerebellin 4 precursor protein"
                     /db_xref="GeneID:228942"
                     /db_xref="MGI:MGI:2154433"
     exon            1..1450
                     /gene="Cbln4"
                     /inference="alignment:Splign:2.1.0"
     CDS             1169..1765
                     /gene="Cbln4"
                     /note="cerebellin-4; cerebellin-like glycoprotein 1"
                     /codon_start=1
                     /product="cerebellin-4 precursor"
                     /protein_id="NP_783439.1"
                     /db_xref="CCDS:CCDS17126.1"
                     /db_xref="GeneID:228942"
                     /db_xref="MGI:MGI:2154433"
                     /translation="MGSARRALSVVPAVLLILVLPVWAQNDTEPIVLEGKCLVVCDSN
                     PATDSKGSSSSPLGISVRAANSKVAFSAVRSTNHEPSEMSNKTRIIYFDQILVNVGNF
                     FTLESVFVAPRKGIYSFSFHVIKVYQSQTIQVNLMLNGKPVISAFAGDKDVTREAATN
                     GVLLYLDKEDKVYLKLEKGNLLGGWQYSTFSGFLVFPL"
     exon            1451..1567
                     /gene="Cbln4"
                     /inference="alignment:Splign:2.1.0"
     exon            1568..2799
                     /gene="Cbln4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaaccgcgca gattcgccga ggtccttcca tctccacatc tgagctggca gcgccacgtt
       61 cggttcagag agtcttgcgc agggcagggt gaggggaccc acaactccct ctgcgggtcc
      121 aggtggagct ggcggcgagc agccgcggac ccctggcagg tgcaggcagg tgagcatcat
      181 cctctgggta cacaaagtgc gatttcgggg ggatcaagtg acctcagacc ttggcagccg
      241 gcagcgccgt gcgtcccgct ctgtccgggt gcgttcaacg tcacacaggc gctgctccgc
      301 tggggtcaac ggacgccttt tctgctttcc ggggatccac gggatgagcg ggcgagccaa
      361 agccatctgc aggcagcact cctataaata gcgcgcgggt gccctctcgg cgctgtccct
      421 ccggctgcac tgcacgctga gacacaaagt tgtgcgcagg gacgcgggaa cccagggcag
      481 taggcgccct gcaccttaga actgcttttg gcgacgggca ctcagctgcc gcctacctgc
      541 gtcggagtga caccgggctt tgggggaatt tttgaccaag cgcaagtgga agtcgctagc
      601 atcctagcca tggacataac ctggcattct tctcatcccc ggaaacacct cctgcctctg
      661 taatttgttc ctgcgccaac cagagtccct cggacaggac cgacacccgc accgctcggc
      721 actagccacc tttgctagcg tttactcgcg gagtcccctc tgtgtcttca gctctgtgct
      781 tcaccaggag tgcttgggtt cggggtgaga atttattttg ttcttttgag gtgtgactga
      841 gagggtctgg agacttttta gatgtcaagg gacaagtgtg ggtgccgtgg ccccaggcaa
      901 aactgatttg ggggtggagg agttagggta ggagttctgc atgagctcct taaaggacaa
      961 aggtaacaga gccagccagc cagttcgaag ggagacttca gtcctgagaa ttggtggaag
     1021 tgcgcgcgcc gctgctgccg ccgccgccgc tgttcctgca gcgctgtcga tctagccact
     1081 ggcgtcttcc cgagctcccg gatcccgggg tagcaggcgc cgcctgggag cagaagcgcc
     1141 aggctgccgc ttgcgcacgc ggctcaccat gggctccgcg cgccgggcgc tgtccgtggt
     1201 accagccgtt ctgctgattc tagtgctgcc tgtctgggca cagaatgaca cggaaccgat
     1261 cgttctggag ggcaagtgtc tggtggtgtg cgactcgaac ccagctacag actccaaggg
     1321 atcatcatct tcccctctgg ggatatcggt ccgggcagca aactccaagg tggctttttc
     1381 ggcggttcgg agcaccaacc acgagccatc tgagatgagc aacaagactc gcatcattta
     1441 ctttgatcag atcctggtta acgtgggtaa ttttttcaca ttggaatctg tctttgtggc
     1501 accgaggaaa ggaatctata gtttcagttt tcacgtaatt aaagtctacc agagccaaac
     1561 catccaggtt aacttgatgt taaatggaaa accagtcatc tctgcatttg ctggtgataa
     1621 agatgtgacc cgtgaagccg ccactaatgg agtgctcctg tacctggaca aagaagataa
     1681 ggtctaccta aaactggaga aaggtaactt gctcggtggc tggcagtatt ccacgttttc
     1741 tggctttctg gtgtttcctc tatagaaccc gacttctccg tgatgcccaa gagtgagggc
     1801 gcccaccccg ggttatcaga agagcactct tggattgatg tctcttactg ttttgttcat
     1861 ggctgactat ggattctctc tgagaattct agacctgtct ggacagacac aaagtttcac
     1921 agatcatttt cgtgtgtgtg ccagtttcct tatatgtgga ctgggactct aaagctgaaa
     1981 aatccccgat ctgcttacat gttaactgtc agaagccgtc tcaaggtttg tcctgtttag
     2041 tttcctgctg ttacagcatt ggctgcagat gtgggttttt tttatttctt tgtttttgaa
     2101 agacaggcta atgggtctga aagttagaaa acttggaagt tctgacttca gtggttatag
     2161 tggaactgcc aaagacatgt atacacgtgt ggatacattg attattaatt atacttttta
     2221 aacaaattat aattactttt gaatttgttt gttttgttct cttaaggtaa ctgggattgt
     2281 attttagtga ctggcgttgt gttctctcta cccataaggt aacaaatgtc ttgcctcaaa
     2341 atgtccctta actctgaact cacccacatg acctccctcc tgcccctaaa acgaatgctc
     2401 catagttgta ttttaattat atatgtgaaa gagtcatatt ttccaaatta tattttctaa
     2461 taggaaaaac agatcataat ctgacaaaga agaagttatt taccccaact ctaatgctca
     2521 gcgccaaacc ttggcaaagt acctctcctt ggtgggaaat cgaatactct atcgctcaac
     2581 cttaattaac atgattgata atagctactt tattaaaccc ataaggaata ttttctcctt
     2641 cactatgacc actttattaa ctggagatag tatgccctta tttttaattg tatctatttt
     2701 tcaaatctcc tgttgtgttt gaaatatcat ctggttttgc cttaattcct taacttgtat
     2761 atatttatct gttcagctaa tattaaatcc agatactcc
//
