LOCUS       NM_001379457            1937 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus ciliogenesis associated TTC17 interacting protein
            (Catip), transcript variant 1, mRNA.
ACCESSION   NM_001379457 XM_011238520
VERSION     NM_001379457.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1937)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1937)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1937)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC098570.7.
            
            On Apr 3, 2020 this sequence version replaced XM_011238520.1.
            
            Transcript Variant: This variant (1) represents the protein-coding
            transcript.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.1100758.1,
                                           SRR5189685.120810.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-52                AC098570.7         86336-86387         c
            53-208              AC098570.7         86000-86155         c
            209-406             AC098570.7         85575-85772         c
            407-462             AC098570.7         85215-85270         c
            463-549             AC098570.7         84119-84205         c
            550-717             AC098570.7         83806-83973         c
            718-842             AC098570.7         81781-81905         c
            843-919             AC098570.7         80659-80735         c
            920-1008            AC098570.7         80300-80388         c
            1009-1937           AC098570.7         79201-80129         c
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 38.54 cM"
     gene            1..1937
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /note="ciliogenesis associated TTC17 interacting protein"
                     /db_xref="GeneID:241112"
                     /db_xref="MGI:MGI:2685062"
     exon            1..52
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..1689
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /codon_start=1
                     /product="ciliogenesis-associated TTC17-interacting
                     protein"
                     /protein_id="NP_001366386.1"
                     /db_xref="CCDS:CCDS15046.1"
                     /db_xref="GeneID:241112"
                     /db_xref="MGI:MGI:2685062"
                     /translation="MSSKVSPTVSKAKDQHHLGQLQQQQQQRQQQQPFPEANAEAISF
                     LNSFCEPDGGAGVGRRGLEDMLLFFPETLAILSDTGEPQGELTIEVQRGKYKDDIGIL
                     THCLLVHASSRGFLDKSLCGSSLLGYLNNNLELMEQHSQEFIKFPVLPMERKMSVLKQ
                     DGQFVVTRSVKEGEETKTGVSVFPYKTFKGFVSSAANVVLLRVMAWQQSVPSGARFLA
                     LDSEGKLCHCTYKSLGFQTIQVGNQQAKMFIVEQTIHSEEGIPFSCQYYLLPDGHLAK
                     RVQVGSPGCCIITKMPLIREEDVIESPPTFDKKPLVWGEDLELYSKFLDRKEQLRLSH
                     ASYLRHHPEAQALVSDFLLFLLLRRPEDVVTFAAEHFRPFAALRSPIPALRSSHQPSP
                     FRTLENEEEEEAKEEEEKEEEEEEEEEIAGEIEGEEEEEEIEEGDDYLYMDEDEDIED
                     YTYYENYYYNYDEEVDSYDDVNNYDDDDIANVDDNDDIDNYDDDNDDDDDDDDNDDED
                     DVDDNDDDDVDKVRAKVDNLSVDNDDNDVVNSDNVDVDNDNNNQG"
     exon            53..208
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /inference="alignment:Splign:2.1.0"
     exon            209..406
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /inference="alignment:Splign:2.1.0"
     exon            407..462
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /inference="alignment:Splign:2.1.0"
     exon            463..549
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /inference="alignment:Splign:2.1.0"
     exon            550..717
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /inference="alignment:Splign:2.1.0"
     exon            718..842
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /inference="alignment:Splign:2.1.0"
     exon            843..919
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /inference="alignment:Splign:2.1.0"
     exon            920..1008
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /inference="alignment:Splign:2.1.0"
     exon            1009..1937
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1919..1924
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /note="hexamer: AATAAA"
     polyA_site      1937
                     /gene="Catip"
                     /gene_synonym="Gm216"
                     /note="major polyA site"
ORIGIN      
        1 agtcacagac tgactagcct caataaaatg tcttccaaag tttcccccac tgtttccaaa
       61 gccaaggacc agcatcactt aggccagctg cagcaacagc agcagcagcg gcagcagcag
      121 cagccattcc cagaagccaa tgctgaagcc atcagctttc tcaactcctt ctgtgagcca
      181 gatggtgggg caggcgtggg gaggagaggg ctggaggata tgctcctgtt cttcccggag
      241 actctggcca tcctctcaga cacaggggaa cctcagggag aactgaccat tgaggtgcag
      301 agggggaagt acaaggacga catagggatc ctgacccact gtctactggt ccacgcctct
      361 agccgcggct tcctagacaa atcgctgtgt gggagctccc tcctaggcta cctaaacaac
      421 aatctggagc tgatggaaca gcacagtcag gagttcatca agttccctgt ccttcccatg
      481 gagaggaaga tgagcgtcct gaagcaggat ggccagtttg ttgtgaccag aagtgtcaag
      541 gagggtgagg aaacgaagac cggagtctct gttttcccct ataaaacatt caagggcttt
      601 gtctccagtg cagccaatgt ggtgctgctg agagtgatgg cctggcagca gtcggtgccc
      661 agtggggctc gcttcctagc cttagactcg gagggcaagc tctgccattg cacctacaaa
      721 tccctgggtt tccagacaat ccaagtgggc aaccagcagg ctaaaatgtt catcgtggag
      781 caaaccatac actctgaaga gggcatcccc ttctcctgcc agtactactt gctccctgat
      841 gggcacctgg ctaagagagt ccaggtgggc tctccaggat gttgtatcat caccaagatg
      901 cccctcataa gagaggagga tgtgatcgag tctccgccca cgtttgataa gaagcccctg
      961 gtgtgggggg aagacttgga gctttactcg aaattcctgg accggaagga gcagctgcgc
     1021 ctcagccacg cgagttatct gcggcatcac cccgaggccc aagccctagt ctccgacttc
     1081 ctgctgttcc tgctgctccg ccggccagag gacgtggtca ctttcgctgc cgagcacttc
     1141 aggccctttg cagcgctgcg ctcgcctatc ccagccctgc gatcctcaca ccagcccagc
     1201 cctttccgca ctctggagaa tgaggaagaa gaggaggcga aggaggagga ggagaaagag
     1261 gaagaggagg aagaggagga ggaaatagcg ggggagatag agggggagga agaagaagag
     1321 gagatagaag agggtgatga ctacttgtac atggacgagg atgaagacat cgaggactac
     1381 acctactatg agaattacta ttacaactac gatgaagaag ttgacagtta cgatgatgtc
     1441 aacaactacg atgatgacga cattgccaat gttgacgaca atgacgatat tgacaattac
     1501 gatgatgaca acgacgatga cgatgatgac gacgacaacg atgacgaaga tgatgttgac
     1561 gacaatgatg acgatgatgt cgacaaagtc cgagccaaag tcgacaacct cagtgtcgac
     1621 aatgatgaca acgatgttgt caacagtgac aacgttgatg tcgacaatga caacaacaac
     1681 cagggttaga ctctcgaaaa agactaggtg ggcggctaga atccggagac tgggcctggc
     1741 tggggctgcg gcttcagtgg gagataagca gggtcctttc ccagttctac tctgtcagaa
     1801 gggactgcat ttggccagct cttcttgtca aaaaagggaa gctttatttt cgtttaccca
     1861 gcaagtttca tgttttcttc ctagagtcta ttttcatagt tatggccatt tcagagaaaa
     1921 taaaattaag gcctgtg
//
