LOCUS       NM_030719               4807 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus cytosolic arginine sensor for mTORC1 subunit 2
            (Castor2), mRNA.
ACCESSION   NM_030719 NM_177877 XM_489710
VERSION     NM_030719.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4807)
  AUTHORS   Bailey,P.J., Klos,J.M., Andersson,E., Karlen,M., Kallstrom,M.,
            Ponjavic,J., Muhr,J., Lenhard,B., Sandelin,A. and Ericson,J.
  TITLE     A global genomic transcriptional code associated with CNS-expressed
            genes
  JOURNAL   Exp Cell Res 312 (16), 3108-3119 (2006)
   PUBMED   16919269
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC094613.1.
            
            On May 15, 2005 this sequence version replaced NM_030719.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC094613.1, SRR1660821.177469.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4807
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 74.39 cM"
     gene            1..4807
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /note="cytosolic arginine sensor for mTORC1 subunit 2"
                     /db_xref="GeneID:80909"
                     /db_xref="MGI:MGI:1933384"
     exon            1..404
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /inference="alignment:Splign:2.1.0"
     CDS             292..1281
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /note="opposite strand transcription unit to Stag3;
                     GATS-like protein 1; GATS-like protein 2; GATS
                     protein-like 2"
                     /codon_start=1
                     /product="cytosolic arginine sensor for mTORC1 subunit 2"
                     /protein_id="NP_109644.2"
                     /db_xref="CCDS:CCDS19717.1"
                     /db_xref="GeneID:80909"
                     /db_xref="MGI:MGI:1933384"
                     /translation="MELHILEHRLQVASVAKESIPLFTYGLIKLAFLSSKTRCKFFSL
                     TETPEDYTIIVDEEGFLELPSSEHLSVADATWLALNVVSGGGSFSSSQPIGVTKIAKS
                     VIAPLADQNISVFMLSTYQTDFILVRERDLPFVTHTLSSEFTILRVVNGETVAAENLS
                     FTNGFVKPKMVQRPVIHPLSSPSNRFCVTSLDPDTLPAVATLLMDVMFYSNGVKDPMA
                     ASDDCGHIRFFSFSLIEGYISLVMDVQTQQRFPSHLLFTSASGELWKMVRIGGQPLGF
                     DECGIVAQISEPLAAADIPAYYISTFKFDHALVPEENISGVIHALKVSQAGKH"
     exon            405..475
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /inference="alignment:Splign:2.1.0"
     exon            476..669
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /inference="alignment:Splign:2.1.0"
     exon            670..802
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /inference="alignment:Splign:2.1.0"
     exon            803..926
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /inference="alignment:Splign:2.1.0"
     exon            927..1037
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1120
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1215
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1216..4769
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3220..3225
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /note="hexamer: AATACA"
     polyA_site      3244
                     /gene="Castor2"
                     /gene_synonym="7530428J21Rik; Gats; Gatsl1; Gatsl2"
                     /note="major polyA site"
ORIGIN      
        1 tgctgctgcg ccgggcgccg cgctcagccg ggcgctgttt gcttgtccac cccgtagctt
       61 gctgcacccc gcaggtcctc cccaggcctc ctttttttgc aacttgccaa gcttcctttt
      121 tctggctcga gtacgaatca acccggcatc gagctccggg cccccttccc tgggccggtt
      181 gccccacggc ttggggcgca cagggggcgg gggccgcggc tcgtccccgt cccccccccc
      241 ccaactcggg ccaccgcgga tgatccgccg tggaggagcc ctgggcggac gatggaactg
      301 cacattctgg aacaccggct gcaagttgcc agcgtcgcca aggagagtat cccgctcttc
      361 acctacggcc tcatcaaact tgccttcctg tcttccaaga ccaggtgcaa gtttttcagt
      421 ctgaccgaga cccctgagga ctacaccatc atcgtagatg aggagggttt ccttgagcta
      481 ccctcctcag agcacctgag tgtggctgat gccacctggc tggccctgaa cgtggtgtcc
      541 ggtggcggca gcttctccag ctcccagccc atcggtgtga caaagattgc caagtctgtc
      601 attgccccac tcgccgacca gaacatctcc gtgtttatgc tgtccaccta tcaaactgac
      661 ttcatcctgg tgcgggagcg ggacctgccc ttcgtcactc acaccttgtc ctcggagttc
      721 accatcctac gcgttgtcaa tggagaaacg gtggcggctg agaatctcag cttcaccaat
      781 ggctttgtga agcccaagat ggtccagagg ccagtcatcc acccactgtc tagcccaagc
      841 aacaggttct gtgtcaccag cctggaccct gacacactgc ccgccgtcgc cacccttctc
      901 atggatgtga tgttctactc caatggagtg aaggacccca tggctgccag tgacgattgt
      961 ggccacatcc gcttcttctc cttctcactc attgagggct acatctcact ggtgatggac
     1021 gtacagaccc agcagaggtt cccgagtcac ttgctattca cgagtgcatc tggagagctc
     1081 tggaagatgg tgcgcatagg aggacaaccc ttgggatttg atgaatgtgg gattgtagcc
     1141 cagatctcag agcccttggc agctgcagac atcccagcat attacatcag tactttcaag
     1201 ttcgaccatg cattggttcc agaagagaat atcagtgggg ttatccatgc cctgaaggtc
     1261 agtcaagcag ggaagcatta gactcgtctc tgggctcctc cctgccacag cccacctggg
     1321 cctttccccc cacgaaggtt attcttgcag tatttcccta tggactgaaa gctcggcccc
     1381 aggaccttta aggaaggggc ctctgggaca ctcccctgat tcctgactcc tccaggcctg
     1441 ggcctgagct agggccaccc ccacatcctc ctcctgcctt ccagagtccc cagccttttc
     1501 agtaatgact ctgtttccgc tcggtggggg tgtgcccatc ttcctccccc aagttccacc
     1561 ccagaaagcg gtctccgagg cccaggacac ttgggaccag cccaaggcct cacctacagc
     1621 ccgcagcaaa caccaaagga agctggcacc tcctgtgaga cactgggatc ggggtcctga
     1681 tgcacctagg gacatcttag ggagttggtg gagcaagatt gggggtacag agctggggaa
     1741 gcccccgtga gccccccctt gaattgatgg ttatggttgc tgctctagtt ttagaggttc
     1801 aggggctggt tccctcagaa tggaggtcag caggccaccc tcaggtcata atggccagtg
     1861 agcctcagac agtagcagtg gggttcctac tcctaagctg gggaggaaag gcaagactct
     1921 agacccccac ctgctgacca cacagggcct gtgtcgattt cctctacaac tgccaagagg
     1981 ggccctgggc caaacttccc cccagagcac ttgtccctgg aggggatccc aggacacccc
     2041 ctctcccacc agcctagagc gccagcttct atctgtcctt tgttcgctct ccccagaccc
     2101 atcatgggca agcaaagact cggcttcttt cagcggtggg catccccacc tgcccaggcc
     2161 tagggtgcct tgggccatgt cccacctccc cagctgtcac ttagaccagc ctagagaatt
     2221 ccccatcatc ctctctgccc cacttttagg ggataaagag gcctcagccc ccacagctca
     2281 tatacctgcc cgaaatacac acagcaatct gtggtcacgg tgataacctg ggaggcagct
     2341 atcttcaagc atttgtagag agacattacc cctgcggggt ttcttcttcg ttgtctttgc
     2401 atacaggtgg ctggggaaag agtagttttg tttggagggg atggagcctg tttgagtctt
     2461 attagggtac ccagtgttca gtgagactta gcaccctgtg tctctgggga cagacacaaa
     2521 tgcaaagatg tatcgtaaga ctcttggccg tgtcttctga ggagggctag tgggagcaga
     2581 gctctgatac aagacaccag gaccccatag caccccctgc agggcatgcc agtgttccac
     2641 caccttcata tggcgctgtt agctgggact gcggggggtc caccagactt tttgctcttg
     2701 gggtgttttg tcgagcctgt gcttcacgat ctccaacaac aaggtcagag gagggaatgt
     2761 ttatctaccc ctgcacagtc ttgtacaaac tgtgtttccc tcctctctgg gccacagaaa
     2821 cacacccaga ggaactcttc tagaatcatg tagaagccag aacccagcat gttaatcaaa
     2881 atcaactctg gttggttttg gttttggttt tttttttttg ttgttgttgt tgttgttgtt
     2941 gttttttaac tccttttgca caaaaccctt aaaaccaaat cttattattt tctggtcccg
     3001 aatgggaaat ggccaagtgg gcggggcttt atagtgaggc ccctgagtcc cctttttctc
     3061 tctctggaag gccttgattg tccggggtac acatctccag aacccctcct gtctcccttt
     3121 ccagtcatcc cttcccacca tataagtgtg ctggccccct gccccctgtg tggaccccta
     3181 gacttgctag gatgagactg tgtattgtac acacctataa atacatgttt tatgttgata
     3241 gagatatatt ctgtaaatag catatatact tgagcaatat atatgttaat atattctgtg
     3301 tgcgcaggac acaggcaagg gcccccacct catgtgcgca cactcgggga cattttgagc
     3361 caccgtatat ttttaattca aatacgtagg caatacgatg agtgaaaaag ccctggggtc
     3421 ctgaggccag cctggagggg agacagaacc aacaacctac cgcaagtggg gcaggctgag
     3481 agggccagtg tagtctgctt catagctact gtacccccat ttccacagcc tagagctctg
     3541 gatgccttca ttttatttgg gagggggggc actgatccag aggagggatt gggttttttt
     3601 gttgttgttg ttgttgttgg gttttgtttt tggttttggt ttttggtttt gttaacagtg
     3661 gctccctccc tcagggttac cccaaaacct ttgtctggta aacccatctg tcccagcctg
     3721 cctccctccc aagtcccttc tccatagaaa gctatagacc tggcatctta cctgactttt
     3781 gttgttattg ttgtattgtt ttcttgaggc agggtctctt tagatagccc tggctatcct
     3841 ggaactctct ttgtagacca ggctggcctt gaattgatag gactctaccc gcctctgcct
     3901 cccgagtgct gggattaaag gtgtgtgcca tcacacctaa gttttttttt aatattatta
     3961 ttaatattat tattcctgca agcttaggaa tctcaggttc tcttccctgc tctcttccta
     4021 ggactgactc cataaggacc cagaccacca cacatactcc cacggttgtg tgtccagaaa
     4081 gggctgggcc tggcttctgc cggccaacct tttaagggac cgcactgctg ttcagctgca
     4141 gtgggtcctt ggaggaagct agctctgttt ctgtgttctg tgggtagatc agcatggtgt
     4201 ggtgtcttca gttctggggg atgtgacagt ccctctacta gtagaggccc tctactctcg
     4261 tgttttttag cactgtctgc tctcttttca gcatcttctg gttttatgaa tatgaaggat
     4321 gactccaccc cctgctaacc cagcctcaga ggggacccaa gtgtcacacc actccgaagt
     4381 cagggttccc tagaggattt cttttgtgtt tttctgcagt gctgaggaat gtaggcaggg
     4441 cctcctgcgt gagaggcaag tactccacag agccactccc agatcctcgc agcagagtct
     4501 ctcggctcac agggagggta ggagattggg ctgttaagaa ggtaaagttt taggaaccgc
     4561 agtcaggaac cccctgggtt gggctaccaa gtcccgaact ctgggggtac tctatcagga
     4621 aagcgcactt caggagttgc tcagtggata gggtgttccc atagcattat tcccagcact
     4681 cgggagatga aagcagtcag atcacaagtt aaggtcagcc tgggctacat gaggctctgt
     4741 ctcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     4801 aaaaaaa
//
