LOCUS       XM_030254084            5590 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus calcium response factor (Carf), transcript
            variant X3, mRNA.
ACCESSION   XM_030254084
VERSION     XM_030254084.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5590
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..5590
                     /gene="Carf"
                     /gene_synonym="Als2cr8; ECBRC-FC1; ECBRC-FC2"
                     /note="calcium response factor; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 5 ESTs, 1878 long SRA reads, 14 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 22 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:241066"
                     /db_xref="MGI:MGI:2182269"
     CDS             255..2324
                     /gene="Carf"
                     /gene_synonym="Als2cr8; ECBRC-FC1; ECBRC-FC2"
                     /codon_start=1
                     /product="calcium-responsive transcription factor isoform
                     X1"
                     /protein_id="XP_030109944.1"
                     /db_xref="GeneID:241066"
                     /db_xref="MGI:MGI:2182269"
                     /translation="MEQRHSLAGNCDDGEKSEREAQGFEHRTCMDSGDPSFGQNDPPT
                     ILPITAPKTYDSLTSQDMPETLTDTQALHEEQFHLLDQNGQPIQYDLQSLGNSTAQMT
                     GMEQVAIPQEPFADEHSPQDISEEKPTGVRADVLEDSTSNYGLRSPASLVLPKKAGAR
                     LVEEPLLAPLQPLSCNTPMWACRLRSCEKIGDSYRGYCVSETELESVLTFHKQQTQTV
                     WGTRQSPSPAKPATRLMWKSQYVPYDGIPFVNAGSRAVVMECQYGPRRKGFQLKKISE
                     QESRSCHLYKATCPARIYIKKVQKFPEYRVPTDPQIDRKIIRLEQEKAFTMLKKNLMD
                     AGGVLRWYVQLPTQQAHQYHESETPGVPLSPSPFPMSPLEEEEAIVRDENCALPSRLH
                     PQVAHKIQELVSQGVGQVYAVRKQLRKFVERELFKPDEIPERHNLSYFPTVNDIKNHI
                     HEVQKSLRTGDVVYNSEIIPATLQWTTDSGNILRETVTVTFAEGNLLGEPIPSKMGTS
                     QTQTAVSPEPLSSFPPKIFTHFQALKLQPRLSSPDGSQALVSVDSHASSSPPGLVDTV
                     GNAEVDNHSVLLGQSQNPGTDTCLTQDNSTSSSTGHLPESVPNPVAEDQLLEGEDVED
                     AGNPEGSVNRTLLGDVQTVPIQIIDSRPVLVEESLSKNQVKQETNEPTLSTEAKTFLD
                     CKKISAT"
ORIGIN      
        1 atctgatgga cctgcgctgc gcctccagga ggggtgcgcc tgcgcattgt gctggtctcc
       61 acggcgcggc ctcggagcca agacgaggta tggtgagatc aacagaggaa gagacaattg
      121 acattgggaa accagcccac tattcacagt tctcaaaagg agtggccatg ctgtaccaca
      181 aagtgccaac aatataacac caaggtcagt gccattaact aatcagagaa aatggaactg
      241 aatgtgaagc cagcatggag cagcgtcatt ccttagcggg caactgtgac gatggtgaga
      301 agtcagaaag agaggctcag ggattcgagc atcggacctg tatggactct ggggatcctt
      361 cctttgggca aaatgatccc cctaccattt tgcccattac tgctcctaaa acatatgatt
      421 cactcacatc acaggatatg ccagagacac tgactgacac acaggccctt catgaagagc
      481 aatttcatct tttggaccaa aatgggcagc ctattcaata tgatcttcag tctttgggaa
      541 attctactgc acaaatgaca gggatggagc aagtggccat acctcaggag ccctttgcag
      601 atgaacatag ccctcaagat atctctgaag agaaacccac tggtgtaaga gcagatgttc
      661 tcgaagacag caccagcaat tacggccttc gctcaccagc atccctcgtg ctacccaaaa
      721 aggcaggagc cagacttgtt gaagaacctt tgctggctcc tctccagcca ctttcttgta
      781 acacacccat gtgggcctgc cgtcttagga gttgtgagaa aattggagat tcctaccgtg
      841 gctactgtgt aagtgagact gaattagaaa gtgtcctaac ttttcacaag cagcaaacac
      901 agactgtctg gggtactcgc cagtctccaa gcccagccaa acctgccaca cgcttgatgt
      961 ggaagtctca gtatgtccca tatgacggaa tcccatttgt caatgcagga agtcgagctg
     1021 tggtaatgga gtgtcagtat ggaccaagga gaaaaggttt tcagttaaaa aaaatcagtg
     1081 agcaagaaag taggtcttgt catctctata aagctacttg tccagccagg atatacatta
     1141 aaaaggtaca gaaatttcct gaatatagag tacctacaga cccccaaatt gacaggaaga
     1201 taatcagact ggagcaggag aaagccttca ctatgctgaa gaagaacctg atggatgctg
     1261 gtggtgtact tcgatggtat gtgcagttac ctacacagca agctcatcag tatcatgaat
     1321 cagagactcc tggtgtccct ttgtcaccgt caccttttcc tatgtctcct cttgaagaag
     1381 aggaagctat agtcagagat gagaactgtg cgttgccctc tcgtctccac ccgcaagtag
     1441 cgcataagat tcaggaacta gtgtcacagg gagtaggaca agtgtatgca gtaaggaagc
     1501 agctaagaaa atttgtggaa agagaactgt tcaaacctga tgagatacct gaaagacata
     1561 atttatctta ttttccaact gtaaatgata taaaaaatca tatccatgag gtacagaaat
     1621 ccttgaggac tggagatgtg gtatataact cagagattat tccagcaacg cttcagtgga
     1681 cgacagatag tgggaacatc ctcagagaga ctgtaacagt tacatttgca gaaggaaatt
     1741 tactaggaga accgattccc agcaaaatgg gaacaagtca gacacagact gctgtgtctc
     1801 cagagccact ttcttcattt ccacccaaaa tatttacaca ctttcaggct ttgaagttac
     1861 agccaagact ctcctctcct gatggctcac aagctttggt atcagtagat agccatgcat
     1921 cctctagtcc tcctggcctt gtggatactg taggaaatgc tgaagtggat aaccactctg
     1981 tactgcttgg tcagagtcaa aaccctggga cagatacatg cctaacccaa gacaacagca
     2041 cctcctcctc cacgggccac ctcccagaat cagttccgaa tccagttgca gaggatcagc
     2101 tgctggaagg tgaagatgtt gaggatgcag ggaatccgga aggaagtgta aataggactc
     2161 tgttgggaga tgtacaaacc gttccaatac agatcataga cagccgtcca gtgcttgttg
     2221 aagaaagtct gtctaagaac caagttaaac aagaaaccaa tgagccaaca ctgtctacag
     2281 aagcaaaaac tttcctggac tgtaaaaaaa tatctgctac ataaatattt taagtttttc
     2341 agaatttaca gctctggccc cttctgattt cttagtaggt ggagattgtc tgagatggtg
     2401 tatcaatcac tggaccagaa atgtatgatg ggcagttttg acttaaagct ccaatatttg
     2461 ttgccaattc tatatttgta tttcccttaa gaaatatttt actttatttt gtattccttt
     2521 attattatta ttattatcca gtaaggcaaa tattttaaaa gatcatctga agttatccac
     2581 agtaatttag tgtgaatgca aatagttatc tcgccaagtt ttggttttta caagacagaa
     2641 aagaccaaca ataaaagcag tgtgtaagtg catgtctagg tgtgtcagaa aatttaaagt
     2701 tgtaagaaca gttttgatta actgacaggt gagaaactat ttatcatctg tttatttgga
     2761 aaggtagagc aatagatgtg tatggtagca cagagccacc aaacaccccc cccccccaat
     2821 gctgcatttg cagtttatcc ttggcttaca tctttaactg taaatgagtg gtactgaagg
     2881 tcatctgtca gacatttcag tgacttggaa atattaaaac attgaattaa tcacacattg
     2941 aaataacaca aatgaatgta aatgacgtgt atgttatatg ggactggagg taaatcccta
     3001 cctaggaata gaaacatgaa aaattcagag atttggggaa atgttagaat ttcctactat
     3061 ttatagatca tttgggggaa cttttgatgg tagaaaaatt gttgttgctt tttaaagatt
     3121 caattttgac tagaaaataa tttaaatagt atttacattt ttttctgtac tagagttctt
     3181 tctgaattga tagtattacg atttatatat ttcaaggtaa gtatatatag cttaaaattt
     3241 agttcatatt tgaaacttaa aaatgtctga tccgatattt actcattaaa taagtatatt
     3301 tatatttata cctagtacca aatatcaagt aattagtatg ttcattataa ccttgttttt
     3361 atggaagatt gactaggtag aaatttcaaa tgtaactgtc ctgaaataag caagctgaat
     3421 gtagtggtac acacctgtaa tcccagcact gaggaggcca aggactcaga ttgtaaattc
     3481 aattagccta ggttatagag caagacctta ctaagaaaga aagagcggat cacctagaag
     3541 attctttttc tggagattca tttgtgagtt acttactttt tttttttttt tttttttttg
     3601 tcttttcgag acagggtttc tctgtgtagc cctggctgtc ctggaactca ctctgtagac
     3661 caggctggcc tggaactcag aaatccgcct gcttctgcct cccgagtgct ggaattaaag
     3721 gtgtgtgcca ccaccgcctg gctaacattt ttatttttaa aaataagaag ttcaagtgga
     3781 tattaaagtt taatattcaa agcatgaaca atataatttg atatttgtcc ttaaaacttt
     3841 acatggattg actttcctaa aatctaattt cccattatta ttcactttgc tttgggtaca
     3901 tgacctgtac ctaaagataa agctctgtta ttttaaaagt aggcagaact ctaaaattca
     3961 ttatctttac atctgtatca ttgtcaacat aacgtttatt atatcttatt gaaagcaaag
     4021 ttcatatata attatatgta tgattattcg taggaactgc ttttcttctt ttcttttttc
     4081 tttctttctt tctttttttt ttaagaaaaa aactaaagat atctgttgcc agtatttata
     4141 gcagcgggct actaagcctg aatatattac attaagttta atacaattcg tagtcacttc
     4201 aaaacccagg ttctcttagt ctgtgtgtac ttaagaggaa tgaaatcaaa ttagtatata
     4261 gtttaggact gtataggtaa tgctcttttg ttatccatgt tatagaaact gtttttcaag
     4321 aacagatagg ttttcatctt ccaataatga ttacggttta ttgctaaata tcttacattc
     4381 cttttttatt tggactgcta aggagaaatg cttgttaaga aacaaactag tcaatttcca
     4441 gtgcggagag aaagagcaga ggacccagcg gttactgtgt aatcaggaac aagtacagtg
     4501 aggatgtgtt tctgccacct cattccgcca ggtggcaggc acctatagtc ccagtgcatc
     4561 tctgtgagct ccaggggagc ccggcccaca cagtgagatc aggacagcca gagctacata
     4621 gtgaggccca ggaagaaaga aaagagataa catatttctg tcacttcatt ctgtttgaat
     4681 gggtcttatg ttaatatttt ttattatgag aacagaaagt tacatacatt cttcccacaa
     4741 acaaaaagaa aacagaaaac tgaatactta tatctctaat tgtatatttt tgctttctta
     4801 ggtagaaact ggaactatta atatttttga gtatttaaat aagtagtttt taaaaaatgg
     4861 tatctaaatg agtttaaaaa tgtatttgtc ttctaaactc atgtatagtc acaacatgtc
     4921 agtgttggct aaaggtgctt agtaccagtt tttgaaaact atgtttacat atttaaatat
     4981 ttaattcttt acaaatgtac aagatcttaa acaaaagtgt ataaaaattt cagtatctgt
     5041 atttggcgtt ctcttaacaa ctccacagca aaatttggca atactctttt gttcatgtat
     5101 tacaagatgt agtatctgta gtggaaagct ggacatttaa aataagcagt tagaaaatca
     5161 taatcatagc ctggcttgtt tctctgcagt tttcatggtc taggcctcca ggtaaactta
     5221 gtatataccc aggaaattac agataaacaa ccacaggaga cttgaccctc ggtagtaatt
     5281 ttctgtgtaa gcagccaatg tacttagaga gctttaacat cttatgcaga gtgaatgttt
     5341 cctaactgat aggaaacata agcttggaga tccggtcctg cattgaagtt tttaatttta
     5401 agccccagct tgtgctttat cttgcttata tcctgtcaag ctatatactt aatcatgtgg
     5461 gtttgagata gtgtttgctt tatactagat ttgtaaaaag attttaaaat atgtatgtat
     5521 atattgtaac ttgatgtaca gtgttcttat tataatgtaa tttttattaa aaaattctgt
     5581 ttttttctta
//
