LOCUS       NM_009800               1624 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus carbonic anhydrase 11 (Car11), transcript variant 1,
            mRNA.
ACCESSION   NM_009800
VERSION     NM_009800.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Reibring,C.G., El Shahawy,M., Hallberg,K., Kannius-Janson,M.,
            Nilsson,J., Parkkila,S., Sly,W.S., Waheed,A., Linde,A. and
            Gritli-Linde,A.
  TITLE     Expression patterns and subcellular localization of carbonic
            anhydrases are developmentally regulated during tooth formation
  JOURNAL   PLoS One 9 (5), e96007 (2014)
   PUBMED   24789143
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1624)
  AUTHORS   Wu,L., Sagong,B., Choi,J.Y., Kim,U.K. and Bok,J.
  TITLE     A systematic survey of carbonic anhydrase mRNA expression during
            mammalian inner ear development
  JOURNAL   Dev Dyn 242 (3), 269-280 (2013)
   PUBMED   23233153
REFERENCE   4  (bases 1 to 1624)
  AUTHORS   Cankaya,M., Hernandez,A.M., Ciftci,M., Beydemir,S., Ozdemir,H.,
            Budak,H., Gulcin,I., Comakli,V., Emircupani,T., Ekinci,D., Kuzu,M.,
            Jiang,Q., Eichele,G. and Kufrevioglu,O.I.
  TITLE     An analysis of expression patterns of genes encoding proteins with
            catalytic activities
  JOURNAL   BMC Genomics 8, 232 (2007)
   PUBMED   17626619
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1624)
  AUTHORS   Verlander,J.W., Miller,R.T., Frank,A.E., Royaux,I.E., Kim,Y.H. and
            Weiner,I.D.
  TITLE     Localization of the ammonium transporter proteins RhBG and RhCG in
            mouse kidney
  JOURNAL   Am J Physiol Renal Physiol 284 (2), F323-F337 (2003)
   PUBMED   12388412
REFERENCE   6  (bases 1 to 1624)
  AUTHORS   Taniuchi,K., Nishimori,I., Takeuchi,T., Ohtsuki,Y. and Onishi,S.
  TITLE     cDNA cloning and developmental expression of murine carbonic
            anhydrase-related proteins VIII, X, and XI
  JOURNAL   Brain Res Mol Brain Res 109 (1-2), 207-215 (2002)
   PUBMED   12531530
  REMARK    GeneRIF: Results describe the tissue distribution of carbonic
            anhydrase-related proteins VIII, X, and XI and their developmental
            expression in the murine embryonic brain.
REFERENCE   7  (bases 1 to 1624)
  AUTHORS   Lovejoy,D.A., Hewett-Emmett,D., Porter,C.A., Cepoi,D.,
            Sheffield,A., Vale,W.W. and Tashian,R.E.
  TITLE     Evolutionarily conserved, 'acatalytic' carbonic anhydrase-related
            protein XI contains a sequence motif present in the neuropeptide
            sauvagine: the human CA-RP XI gene (CA11) is embedded between the
            secretor gene cluster and the DBP gene at 19q13.3
  JOURNAL   Genomics 54 (3), 484-493 (1998)
   PUBMED   9878252
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC167242.4.
            
            On Sep 13, 2022 this sequence version replaced NM_009800.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK140073.1, BC019393.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-536               AC167242.4         100464-100999
            537-611             AC167242.4         101086-101160
            612-754             AC167242.4         101884-102026
            755-940             AC167242.4         103094-103279
            941-1036            AC167242.4         103493-103588
            1037-1109           AC167242.4         103722-103794
            1110-1264           AC167242.4         104119-104273
            1265-1430           AC167242.4         104373-104538
            1431-1624           AC167242.4         105149-105342
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 29.44 cM"
     gene            1..1624
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /note="carbonic anhydrase 11"
                     /db_xref="GeneID:12348"
                     /db_xref="MGI:MGI:1336193"
     exon            1..536
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /inference="alignment:Splign:2.1.0"
     CDS             470..1456
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; carbonic anhydrase-related protein 11; CA-XI;
                     CARP-2; CARP XI; CA-RP II; carbonic anhydrase-related
                     protein 2; CA-RP XI"
                     /codon_start=1
                     /product="carbonic anhydrase-related protein 11 isoform 1
                     precursor"
                     /protein_id="NP_033930.1"
                     /db_xref="CCDS:CCDS21259.1"
                     /db_xref="GeneID:12348"
                     /db_xref="MGI:MGI:1336193"
                     /translation="MGGAARLSAPQALVLWAALGAAAHIGPAPDPEDWWSYKENLQGN
                     FVPGPPFWGLVNAAWSLCAVGKRQSPVDVELKRVLYDPFLPPLRLSTGGEKLRGTLYN
                     TGRHVSFLPASRPVVNVSGGPLLYSHRLSELRLLFGARDGAGSEHQINHEGFSAEVQL
                     IHFNQELYGNLSAASRGPNGLAILSLFVNVAGSSNPFLSRLLNRDTITRISYKNDAYF
                     LQDLSLELLFPESFGFITYQGSLSTPPCSETVTWILIDRALNITSLQMHSLRLLSQNP
                     PSQIFQSLSGNGRPLQPLAHRALRGNRDPRHPERRCRGPNYRLHVDGGPHGR"
     exon            537..611
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /inference="alignment:Splign:2.1.0"
     exon            612..754
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /inference="alignment:Splign:2.1.0"
     exon            755..940
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1036
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /inference="alignment:Splign:2.1.0"
     exon            1037..1109
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..1264
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /inference="alignment:Splign:2.1.0"
     exon            1265..1430
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /inference="alignment:Splign:2.1.0"
     exon            1431..1624
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1533..1538
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /note="hexamer: ATTAAA"
     polyA_site      1551
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /note="major polyA site"
     regulatory      1599..1604
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Car11"
                     /gene_synonym="Ca11"
                     /note="hexamer: ATTAAA"
     polyA_site      1624
                     /gene="Car11"
                     /gene_synonym="Ca11"
ORIGIN      
        1 agaagacgag aggaggtgga gatggaaaga gggagaggca gcgcagggtg agggaggagg
       61 tgagatagaa ggaagaaggg aaggcagagt cgaataggga ggaggaagag gacagaggga
      121 agaagagaag gcagggtgag ggaggaggcg gagggagagg agcgcacgcg gcgagtgcgc
      181 ggccgggttc gctggttgag agcgaagaag gggtgtgcat tggcaccgag agggacccgg
      241 ggccggcgag ggcgatcgca gcttcgggag gtagagcgag tgcagggagc gggcccaggc
      301 gggcggagga gtgagcgtca aacgggctct ggggtacacg gtcccagccc ctgtatcccg
      361 ggagctgggg ctcccgttct ggtgacagcc aggctggaag tcccaagagg aggggaggga
      421 agagctaggg ggtcgggcgc tgggaaaggg tcgctccgag gcctcttgga tggggggtgc
      481 cgctcgcctg agcgcccctc aagcgctggt actctgggcc gcactgggag cggcagctca
      541 catcggacct gcacctgatc ccgaggactg gtggagctac aaggagaatc tccagggaaa
      601 cttcgtgcca gggcctccct tctggggcct ggtgaacgct gcctggagcc tgtgcgctgt
      661 ggggaagcgg cagagccccg tggatgtgga gctgaagcgg gttctttatg acccttttct
      721 gcccccgctc agactcagca ccgggggaga gaagctccgg ggaaccttgt acaacactgg
      781 ccgccatgtc tccttcctac ctgcatcccg acctgtggtc aacgtgtctg ggggtcccct
      841 tctttatagc caccgactca gtgaactgcg cctgctattt ggagctcgag atggtgccgg
      901 ctctgaacac cagatcaacc atgaaggctt ctccgctgag gtgcagctaa tccacttcaa
      961 ccaagaactc tatgggaacc tcagtgctgc ctcaaggggc cccaacggcc tggccattct
     1021 cagcctcttt gtcaatgtgg ctggcagttc caacccattc ctcagtcgcc tcctcaaccg
     1081 ggacactatc acccgaatct cctacaaaaa tgatgcctac tttcttcaag acctgagcct
     1141 ggagctcctg ttcccagaat ccttcggctt catcacctat cagggatctc tcagcactcc
     1201 tccgtgctct gagactgtca cctggatcct catcgacagg gctctcaata ttacctccct
     1261 ccagatgcac tccctgagac tcctgagcca gaatcccccc tcccagatct tccagagcct
     1321 cagtggtaat ggccggccct tgcagcccct ggcccacaga gccttgaggg gcaacaggga
     1381 cccccggcat cccgagaggc gctgccgagg ccccaactac cgcctgcatg tggacggtgg
     1441 tcctcacggt cgctgagact ccccaacgag gattacgccc gcctgttctg agtttcctca
     1501 ccaggggagg ggattcaccc caaaacaaag ctattaaaag gactgaatgt ttccggtttc
     1561 tcggtggttt atcagtcgcg attgaggaac atctagatat taaaaaaaaa aaatccttcc
     1621 cgaa
//
