LOCUS       NM_029341                928 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus calcyphosine-like (Capsl), transcript variant 1, mRNA.
ACCESSION   NM_029341
VERSION     NM_029341.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Jones,M.R., Dilai,S., Lingampally,A., Chao,C.M., Danopoulos,S.,
            Carraro,G., Mukhametshina,R., Wilhelm,J., Baumgart-Vogt,E., Al
            Alam,D., Chen,C., Minoo,P., Zhang,J.S. and Bellusci,S.
  TITLE     A Comprehensive Analysis of Fibroblast Growth Factor Receptor 2b
            Signaling on Epithelial Tip Progenitor Cells During Early Mouse
            Lung Branching Morphogenesis
  JOURNAL   Front Genet 9, 746 (2019)
   PUBMED   30728831
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 928)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
REFERENCE   3  (bases 1 to 928)
  AUTHORS   Michaud,E.J., Culiat,C.T., Klebig,M.L., Barker,P.E., Cain,K.T.,
            Carpenter,D.J., Easter,L.L., Foster,C.M., Gardner,A.W., Guo,Z.Y.,
            Houser,K.J., Hughes,L.A., Kerley,M.K., Liu,Z., Olszewski,R.E.,
            Pinn,I., Shaw,G.D., Shinpock,S.G., Wymore,A.M., Rinchik,E.M. and
            Johnson,D.K.
  TITLE     Efficient gene-driven germ-line point mutagenesis of C57BL/6J mice
  JOURNAL   BMC Genomics 6, 164 (2005)
   PUBMED   16300676
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 928)
  AUTHORS   Sousa-Nunes,R., Rana,A.A., Kettleborough,R., Brickman,J.M.,
            Clements,M., Forrest,A., Grimmond,S., Avner,P., Smith,J.C.,
            Dunwoodie,S.L. and Beddington,R.S.
  TITLE     Characterizing embryonic gene expression patterns in the mouse
            using nonredundant sequence-based selection
  JOURNAL   Genome Res 13 (12), 2609-2620 (2003)
   PUBMED   14613977
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC162301.3.
            
            On Mar 23, 2023 this sequence version replaced NM_029341.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK006467.1, BC061015.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               AC162301.3         52594-52711
            119-255             AC162301.3         74241-74377
            256-433             AC162301.3         78201-78378
            434-643             AC162301.3         79135-79344
            644-928             AC162301.3         82299-82583
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 4.09 cM"
     gene            1..928
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /note="calcyphosine-like"
                     /db_xref="GeneID:75568"
                     /db_xref="MGI:MGI:1922818"
     exon            1..118
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            119..255
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            256..433
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            434..643
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            644..928
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      901..906
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /note="hexamer: AATAAA"
     polyA_site      928
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /note="major polyA site"
ORIGIN      
        1 agcaaaggaa gacaggtaag agggagacac aggaccatgg gaggagacta gagtccccag
       61 ggccagaagt ccagagtttc accgtgaagc agcctgcggc tacagacgag catttcagat
      121 ggcagggaca gcgcgccatg accgggagat ggcaatccaa tccaagaaaa agctctccac
      181 agctactgat cctattgaaa gacttcggtt gcagtgcctg gccagaggtt ctgcaggcat
      241 caaaggactt ggcagagtgt ttcgaattat ggatgacaat aacaaccgaa cccttgattt
      301 caaagaattt ttgaaaggct taaatgatta cgctgtggtc atggaaaaag aggaggcaga
      361 agaacttttc cagagattcg atagagacgg cagtggaaca atagacttca atgagtttct
      421 tctcacgtta aggcctccaa tgtccagagc cagaaaagag gtaatcatga aagcttttag
      481 aaagttagac aaaactggag atggggttat aaccattgaa gaccttcgtg aagtttataa
      541 cgctaaacat catccaaagt atcaaaatgg ggaatggacg gaggaacaag tcttcaggaa
      601 atttctggat aactttgact caccctatga taaagatgga ttggtgaccc ccgaggaatt
      661 catgaactac tatgcaggtg taagtgcatc cattgacaca gatgtgtact tcatcatcat
      721 gatgacgacg gcttggaagc tctaaagacc tgtccctgga aaccaggcca tgcatgcagt
      781 cacgtgactc caagtgatta cgctctaccc ccaaactcag aatgctcttc aattcactgt
      841 tcatcaaaca gactcttctt tgccaacaca ctgtattttc taggctgaca agagggcaga
      901 aataaagtca ctaagtaatt aactatga
//
