LOCUS       NM_001418759             718 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus calcyphosine-like (Capsl), transcript variant 2, mRNA.
ACCESSION   NM_001418759 XM_006520186
VERSION     NM_001418759.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Jones,M.R., Dilai,S., Lingampally,A., Chao,C.M., Danopoulos,S.,
            Carraro,G., Mukhametshina,R., Wilhelm,J., Baumgart-Vogt,E., Al
            Alam,D., Chen,C., Minoo,P., Zhang,J.S. and Bellusci,S.
  TITLE     A Comprehensive Analysis of Fibroblast Growth Factor Receptor 2b
            Signaling on Epithelial Tip Progenitor Cells During Early Mouse
            Lung Branching Morphogenesis
  JOURNAL   Front Genet 9, 746 (2019)
   PUBMED   30728831
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
REFERENCE   3  (bases 1 to 718)
  AUTHORS   Michaud,E.J., Culiat,C.T., Klebig,M.L., Barker,P.E., Cain,K.T.,
            Carpenter,D.J., Easter,L.L., Foster,C.M., Gardner,A.W., Guo,Z.Y.,
            Houser,K.J., Hughes,L.A., Kerley,M.K., Liu,Z., Olszewski,R.E.,
            Pinn,I., Shaw,G.D., Shinpock,S.G., Wymore,A.M., Rinchik,E.M. and
            Johnson,D.K.
  TITLE     Efficient gene-driven germ-line point mutagenesis of C57BL/6J mice
  JOURNAL   BMC Genomics 6, 164 (2005)
   PUBMED   16300676
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 718)
  AUTHORS   Sousa-Nunes,R., Rana,A.A., Kettleborough,R., Brickman,J.M.,
            Clements,M., Forrest,A., Grimmond,S., Avner,P., Smith,J.C.,
            Dunwoodie,S.L. and Beddington,R.S.
  TITLE     Characterizing embryonic gene expression patterns in the mouse
            using nonredundant sequence-based selection
  JOURNAL   Genome Res 13 (12), 2609-2620 (2003)
   PUBMED   14613977
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC162301.3.
            
            On Mar 23, 2023 this sequence version replaced XM_006520186.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13862019.1966439.1,
                                           SRR13862051.3371096.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               AC162301.3         52594-52711
            119-255             AC162301.3         74241-74377
            256-433             AC162301.3         78201-78378
            434-718             AC162301.3         82299-82583
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 4.09 cM"
     gene            1..718
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /note="calcyphosine-like"
                     /db_xref="GeneID:75568"
                     /db_xref="MGI:MGI:1922818"
     exon            1..118
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             119..535
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /note="isoform 2 is encoded by transcript variant 2;
                     calcyphosin-like protein; Calcyphosine"
                     /codon_start=1
                     /product="calcyphosin-like protein isoform 2"
                     /protein_id="NP_001405688.1"
                     /db_xref="GeneID:75568"
                     /db_xref="MGI:MGI:1922818"
                     /translation="MAGTARHDREMAIQSKKKLSTATDPIERLRLQCLARGSAGIKGL
                     GRVFRIMDDNNNRTLDFKEFLKGLNDYAVVMEKEEAEELFQRFDRDGSGTIDFNEFLL
                     TLRVTPEEFMNYYAGVSASIDTDVYFIIMMTTAWKL"
     exon            119..255
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            256..433
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            434..718
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      691..696
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /note="hexamer: AATAAA"
     polyA_site      718
                     /gene="Capsl"
                     /gene_synonym="1700028N11Rik"
                     /note="major polyA site"
ORIGIN      
        1 agcaaaggaa gacaggtaag agggagacac aggaccatgg gaggagacta gagtccccag
       61 ggccagaagt ccagagtttc accgtgaagc agcctgcggc tacagacgag catttcagat
      121 ggcagggaca gcgcgccatg accgggagat ggcaatccaa tccaagaaaa agctctccac
      181 agctactgat cctattgaaa gacttcggtt gcagtgcctg gccagaggtt ctgcaggcat
      241 caaaggactt ggcagagtgt ttcgaattat ggatgacaat aacaaccgaa cccttgattt
      301 caaagaattt ttgaaaggct taaatgatta cgctgtggtc atggaaaaag aggaggcaga
      361 agaacttttc cagagattcg atagagacgg cagtggaaca atagacttca atgagtttct
      421 tctcacgtta agggtgaccc ccgaggaatt catgaactac tatgcaggtg taagtgcatc
      481 cattgacaca gatgtgtact tcatcatcat gatgacgacg gcttggaagc tctaaagacc
      541 tgtccctgga aaccaggcca tgcatgcagt cacgtgactc caagtgatta cgctctaccc
      601 ccaaactcag aatgctcttc aattcactgt tcatcaaaca gactcttctt tgccaacaca
      661 ctgtattttc taggctgaca agagggcaga aataaagtca ctaagtaatt aactatga
//
