LOCUS       XM_011250420            1665 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus calpain, small subunit 1 (Capns1),
            transcript variant X2, mRNA.
ACCESSION   XM_011250420
VERSION     XM_011250420.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1665
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..1665
                     /gene="Capns1"
                     /gene_synonym="Capa-4; Capa4; Capn4; Cdps; Css1;
                     D7Ertd146e"
                     /note="calpain, small subunit 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 42 ESTs, 3175 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 39 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:12336"
                     /db_xref="MGI:MGI:88266"
     CDS             630..1100
                     /gene="Capns1"
                     /gene_synonym="Capa-4; Capa4; Capn4; Cdps; Css1;
                     D7Ertd146e"
                     /codon_start=1
                     /product="calpain small subunit 1 isoform X2"
                     /protein_id="XP_011248722.1"
                     /db_xref="GeneID:12336"
                     /db_xref="MGI:MGI:88266"
                     /translation="MEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTT
                     GKLGFEEFKYLWNNIKKWQAIYKRFDTDRSGTIGSHELPGAFEAAGFHLNEHLYSMII
                     RRYADESGNMDFDNFISCLVRLDAMFRAFKSLDKNGTGQIQVNIQEWLQLTMYS"
ORIGIN      
        1 ctggtgtcac tttttagtac caggattagt aaacctgctt ctgtgggtca acaaatagga
       61 tgcagtttct tggggatagg ggctcttctg tgtttgggga aggtgcaatt ctataggatt
      121 gtatccagcc ttcactgggg gcgcagccag tggatctaag gctgtccatg gcttaagatt
      181 tgagcgaggt ggagcttgct gttttaggag agatcagagt ccccaaagaa gaaatggtcc
      241 agagaaggtt gtgtggggtc tggagctgat tggtttagtg ggtaaaaatc ctttgctggg
      301 gttagaacag gtggctggca cctatatcgt tggtgatcca agcactgatc cctgggagga
      361 gtaggggctg atggggggcg ggagaggtag acgttaggca gttagataat ctgcaaaagg
      421 agcgatggag taagactctg gacaactgaa cccgaggaag atgaggccta ggaaagctgg
      481 tgcagacaga cccccttgtg aacgaggctg ctgcgcagta caacccggag cctccgcctc
      541 cacgtagtca ttactccaat attgaggcca acgagagtga agaagtccgt cagttcagga
      601 aactttttgt ccagctggct ggagacgaca tggaggtcag cgccacagaa ctcatgaata
      661 tcctcaacaa ggtcgtgacc cgacacccgg atctgaaaac tgatggtttt ggcattgaca
      721 cttgtcggag catggtggcc gtcatggata gcgacaccac aggcaagctg ggctttgagg
      781 agttcaaata cctctggaac aacattaaaa agtggcaggc tatatacaaa cgctttgata
      841 ctgaccgatc agggactatc ggtagccatg aacttccagg ggcctttgag gcagcaggat
      901 tccacctgaa tgagcatctc tacagcatga tcatccggcg ctacgcagat gagagcggga
      961 acatggattt cgataacttc atcagctgct tggtcaggct agatgccatg ttccgcgctt
     1021 tcaaatctct tgacaaaaat ggcaccggac agatccaagt gaacatccag gagtggctgc
     1081 agctgactat gtattcctga atgggagtgg cagacctgcc ccctcacagc tcactatgga
     1141 gccaccttga accctgatcc tgactgcagc cgcattttca tggtcatgtc ctgctaccca
     1201 gaggcctttc gtctccctgt tctggtaccc agcttcccaa tcagcagcca gagctcaaca
     1261 tgccacacct tgctgcaccc tgagttaccc ctggctctga gacaagctag cttgttctac
     1321 tgaagggtca ccccacccta gcacacccaa tccacgccat ctgttacctt catcctgtct
     1381 gtgtgccaag cctagcactc ctgctgcttc catgtcccaa gggccctgtc ttagttctgg
     1441 gaggatcaca cctgtcccta cacaccctgt tacacactca cacagttacc tcccaggcag
     1501 ccagatgaac tccaggccat ggcaggtcca cacaccctag tgcctacgcc tgctctgtgc
     1561 tccccctgca cagcggtcgg gcccaggaga aaataaactc tctctacttg ctgcttcctt
     1621 cggactctga gtgctgagtc caggcaggag ggaacatgag ctcta
//
