LOCUS       XM_006539488            1672 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus calpain, small subunit 1 (Capns1),
            transcript variant X1, mRNA.
ACCESSION   XM_006539488
VERSION     XM_006539488.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006539488.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..1672
                     /gene="Capns1"
                     /gene_synonym="Capa-4; Capa4; Capn4; Cdps; Css1;
                     D7Ertd146e"
                     /note="calpain, small subunit 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     mRNAs, 48 ESTs, 5475 long SRA reads, 16 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 40 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:12336"
                     /db_xref="MGI:MGI:88266"
     CDS             301..1107
                     /gene="Capns1"
                     /gene_synonym="Capa-4; Capa4; Capn4; Cdps; Css1;
                     D7Ertd146e"
                     /codon_start=1
                     /product="calpain small subunit 1 isoform X1"
                     /protein_id="XP_006539551.1"
                     /db_xref="GeneID:12336"
                     /db_xref="MGI:MGI:88266"
                     /translation="MFLVNSFLKGGGGGGGGGGLGGGLGNVLGGLISGAAGGGGGGGG
                     GMGLGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRSHYSNIEANESEEVRQFR
                     KLFVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG
                     FEEFKYLWNNIKKWQAIYKRFDTDRSGTIGSHELPGAFEAAGFHLNEHLYSMIIRRYA
                     DESGNMDFDNFISCLVRLDAMFRAFKSLDKNGTGQIQVNIQEWLQLTMYS"
ORIGIN      
        1 taagagggca gagactctgg caagctaaga gagacgaagt cagccttgca gtctagttta
       61 ttgtgcgtga aggattgtga gagtcattgg aaaccttcca ggagaaaagt ggatgaggag
      121 caacaggcgc agtctgcaat ggaggctcta ggaccgcgca gacgacggct gggtggcggc
      181 agggtctaac ccggagtagc tgcctgagtc accggccccg ccctcccgaa ccggacacag
      241 cggaggccct gcagcaggcg agcaagaccg cggaccgccg gatccgactc agctgcgatc
      301 atgttcttgg tgaattcgtt cttgaagggc ggcggtggcg gtgggggagg cgggggtctg
      361 ggcgggggcc tggggaatgt gctcggaggc ctgatcagcg gagctgctgg cggcggcggc
      421 ggtggcggtg gaggcatggg actgggagga ggtggcggag gcggtggaac tgccatgcgc
      481 atcctgggcg gagtcattag cgccatcagc gaggctgctg cgcagtacaa cccggagcct
      541 ccgcctccac gtagtcatta ctccaatatt gaggccaacg agagtgaaga agtccgtcag
      601 ttcaggaaac tttttgtcca gctggctgga gacgacatgg aggtcagcgc cacagaactc
      661 atgaatatcc tcaacaaggt cgtgacccga cacccggatc tgaaaactga tggttttggc
      721 attgacactt gtcggagcat ggtggccgtc atggatagcg acaccacagg caagctgggc
      781 tttgaggagt tcaaatacct ctggaacaac attaaaaagt ggcaggctat atacaaacgc
      841 tttgatactg accgatcagg gactatcggt agccatgaac ttccaggggc ctttgaggca
      901 gcaggattcc acctgaatga gcatctctac agcatgatca tccggcgcta cgcagatgag
      961 agcgggaaca tggatttcga taacttcatc agctgcttgg tcaggctaga tgccatgttc
     1021 cgcgctttca aatctcttga caaaaatggc accggacaga tccaagtgaa catccaggag
     1081 tggctgcagc tgactatgta ttcctgaatg ggagtggcag acctgccccc tcacagctca
     1141 ctatggagcc accttgaacc ctgatcctga ctgcagccgc attttcatgg tcatgtcctg
     1201 ctacccagag gcctttcgtc tccctgttct ggtacccagc ttcccaatca gcagccagag
     1261 ctcaacatgc cacaccttgc tgcaccctga gttacccctg gctctgagac aagctagctt
     1321 gttctactga agggtcaccc caccctagca cacccaatcc acgccatctg ttaccttcat
     1381 cctgtctgtg tgccaagcct agcactcctg ctgcttccat gtcccaaggg ccctgtctta
     1441 gttctgggag gatcacacct gtccctacac accctgttac acactcacac agttacctcc
     1501 caggcagcca gatgaactcc aggccatggc aggtccacac accctagtgc ctacgcctgc
     1561 tctgtgctcc ccctgcacag cggtcgggcc caggagaaaa taaactctct ctacttgctg
     1621 cttccttcgg actctgagtg ctgagtccag gcaggaggga acatgagctc ta
//
