LOCUS       NM_001033444            2614 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus calpain 13 (Capn13), mRNA.
ACCESSION   NM_001033444 XM_355038 XM_888149 XM_917923 XM_925352
VERSION     NM_001033444.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2614)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK136569.1.
            
            On Apr 5, 2007 this sequence version replaced NM_001033444.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK136569.1, BC147512.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2614              AK136569.1         2-2615
FEATURES             Location/Qualifiers
     source          1..2614
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 44.84 cM"
     gene            1..2614
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /note="calpain 13"
                     /db_xref="GeneID:381122"
                     /db_xref="MGI:MGI:2685789"
     exon            1..124
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            125..352
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..2158
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /note="calcium-activated neutral proteinase 13"
                     /codon_start=1
                     /product="calpain-13"
                     /protein_id="NP_001028616.1"
                     /db_xref="CCDS:CCDS37690.1"
                     /db_xref="GeneID:381122"
                     /db_xref="MGI:MGI:2685789"
                     /translation="MAHDAETSVVKFKNQDFRTLRDHCLSRGQLFIDDTFPAAASSIG
                     EKLLRGKHLSKLEWKRPTSKDLPFYPPHFILEGASRFDIHQGIAGDCWFLAALGSLTQ
                     NPQCLQKILMDQSYSHQYAGIFQFRFWQCGQWVEVVIDDQLPVIGDNFLFVHPRGGNK
                     EFWPCLMEKAYAKLLGSYSQLHYGYLPDALVDLTGGVVTIINLHSSPFDLLTTVKTAI
                     QAGSMVACATENGLTEEAKVMENGLVSQHAYTVTGAEKIQYQGRWEDIIRLWNPWGKT
                     EWKGRWKDGSKEWRETHDPRKSQLYENKEDGEFWMSCQDFQENFSCLFICNQIPITMD
                     HGVTPNESWRQMRFTNQVISRNRAGGHGRDMQYVFSVQEHTAGNNVVVAFTIMPQSLN
                     TEEERFPLQFQVFKVPQFQNVQGRLPPAFFSPFRSAAQGTKYVSKCNFTKSFHLNPGT
                     YVVVTTANGKEVEFLLRIFLKMPDKHRDPSSNFNLRALKESLPENGSRNSISYTYMDQ
                     GLDIDATQLQSLLNQEFLTGPPGDTFSLDQCQSIMALMDLKVNGRLDQEEFARLRSRL
                     IHCQHIFQSIQRRPGVLLSSDLWKVIENTDFLVGIFISSELLSLMALRYSDSSGRVSF
                     PTLVCFLIRLETMAKAFRNLSKDGKGIYLTETEWMNLVMYS"
     exon            353..425
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            426..541
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            542..678
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            679..853
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            854..928
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            929..1014
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..1089
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            1090..1235
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1378
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            1379..1387
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            1388..1590
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            1591..1627
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            1628..1684
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            1685..1742
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..1801
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            1802..1870
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            1871..1946
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            1947..2075
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            2076..2131
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            2132..2190
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     exon            2191..2614
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      2614
                     /gene="Capn13"
                     /gene_synonym="CANP 13; Gm943"
                     /note="putative"
ORIGIN      
        1 aggcagaacc tagtactgcc agttcccttg tattccctcc aaaggaacag aggtctcctc
       61 caccgtcccc tctacctctc tccaggcctc aagactgctt ggccagtaca actgcctcat
      121 actgaaagaa aggacttcag acatctttct agagctagtc atggcacatg atgcagagac
      181 ctccgtggtc aagttcaaga atcaggactt caggacctta cgggatcatt gcctgagcag
      241 gggtcagctg tttatagatg atacattccc tgctgcggca tcttccatag gcgagaagct
      301 actcaggggg aagcaccttt cgaaactgga gtggaaacga ccaacttcaa aggatttacc
      361 cttctacccc cctcacttca ttctggaagg tgcaagcaga tttgacatcc accaaggaat
      421 agcaggagac tgctggttcc tggcagcact gggctccctg acccagaacc cgcagtgtct
      481 gcagaagatc ctgatggacc aaagctattc gcaccagtat gctgggattt tccagttccg
      541 gttctggcag tgtggccagt gggtggaagt agtgatagat gaccaattgc ccgtcatagg
      601 cgataacttc ctttttgtgc atcctcgagg aggcaacaag gaattttggc cctgcctgat
      661 ggagaaagcc tatgccaagc tacttggctc ctattcccaa ttacactatg gctaccttcc
      721 tgatgccctg gtggacctca caggaggagt ggtcaccatc atcaacctgc actcctctcc
      781 atttgaccta ctgacgacag tgaagaccgc aatccaagca ggctcaatgg tggcctgtgc
      841 caccgaaaat gggctgacag aagaggccaa agtgatggag aatggactgg tgagccagca
      901 cgcatacaca gtgactggag ctgagaagat tcagtaccag gggcgttggg aagacatcat
      961 ccgcctttgg aacccctggg gcaagacaga atggaaagga cgctggaaag atgggtccaa
     1021 ggagtggaga gaaacccatg acccacggaa aagccagctg tatgagaaca aggaagatgg
     1081 cgagttttgg atgtcctgtc aagatttcca ggagaacttc tcctgcctgt tcatatgtaa
     1141 ccagatcccg atcaccatgg atcatggagt cacacccaat gagagctggc gacaaatgag
     1201 gtttacaaac caagtgatct caagaaacag agcaggagga catgggaggg atatgcagta
     1261 tgtctttagt gttcaagagc acactgctgg gaataatgtc gtggtggcct tcacaatcat
     1321 gccacaaagc ctgaatacag aagaggagag atttccacta cagttccagg tattcaaggt
     1381 gccccagttc cagaatgtcc agggaagatt gcctcctgca tttttctccc catttagaag
     1441 tgctgcccaa ggcacaaagt atgtgtccaa gtgcaacttc acaaagtcct tccacctgaa
     1501 tcctggtacc tatgtagtgg ttaccacagc aaacggaaaa gaagtggaat tcctactccg
     1561 aatattcctc aaaatgccag acaagcacag ggatccaagc agcaatttca acctcagagc
     1621 cctcaaggaa agtcttccag aaaatggatc ccgaaatagc atttcctaca catacatgga
     1681 tcaggggctg gacattgatg ccacccaact tcagagcctt ctcaatcagg agttcctaac
     1741 agggcctcca ggggacactt tctccttgga ccagtgccaa agcatcatgg ccctgatgga
     1801 tctgaaagtg aatgggcggc tagatcagga agagtttgca agactccgaa gtcgccttat
     1861 ccactgccag catattttcc agagcatcca gagacgccct ggagttctcc tcagctcaga
     1921 cttatggaaa gtcatagaga atacagactt ccttgtagga attttcatca gcagcgagct
     1981 gctgagtctc atggcactca ggtacagcga tagctctggc cgggtcagct tccccactct
     2041 tgtctgcttc ctgatacggc tggaaaccat ggcaaaggca tttcgcaacc tctccaagga
     2101 tggcaaaggc atctacctga cagaaacaga gtggatgaac ctggtcatgt acagctgagg
     2161 ggagaaaccc agcagaggcc tctggaccag gacatgttcc cagtggtcac tcgaggaaac
     2221 ggctgtcccc atggagctgt gccaacccct acggtctgca gctaaacctg gtatttgaaa
     2281 tggagtcaaa gatgccttcg aagagcctag actgaggtcc tggctgaggc aggctccgat
     2341 caaccctagg tcatcagagc acgtgctgat atcagcaggc acttgcagga aaacaaaaca
     2401 ggaaacgttc actcctgctg acattccatc cccttcccac actctccctg gatccatttc
     2461 ttgggaaaac cagtctgatc cagtttatgc accccccagg tggtgttgct gacccaggaa
     2521 tggtctactc agtgccattt gccaaataac cacattcttt tgtagctgca gcagagttgt
     2581 ttcacagcta aatggccaaa taaaatttat ttct
//
