LOCUS       NM_138304                861 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus calmodulin-like 4 (Calml4), transcript variant 1,
            mRNA.
ACCESSION   NM_138304
VERSION     NM_138304.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 861)
  AUTHORS   Choi,M.S., Graves,M.J., Matoo,S., Storad,Z.A., El Sheikh
            Idris,R.A., Weck,M.L., Smith,Z.B., Tyska,M.J. and Crawley,S.W.
  TITLE     The small EF-hand protein CALML4 functions as a critical myosin
            light chain within the intermicrovillar adhesion complex
  JOURNAL   J Biol Chem 295 (28), 9281-9296 (2020)
   PUBMED   32209652
  REMARK    GeneRIF: The small EF-hand protein CALML4 functions as a critical
            myosin light chain within the intermicrovillar adhesion complex.
REFERENCE   3  (bases 1 to 861)
  AUTHORS   Lewandowski,J.P., Du,F., Zhang,S., Powell,M.B., Falkenstein,K.N.,
            Ji,H. and Vokes,S.A.
  TITLE     Spatiotemporal regulation of GLI target genes in the mammalian limb
            bud
  JOURNAL   Dev Biol 406 (1), 92-103 (2015)
   PUBMED   26238476
REFERENCE   4  (bases 1 to 861)
  AUTHORS   Yoon,H., Lee,D.J., Kim,M.H. and Bok,J.
  TITLE     Identification of genes concordantly expressed with Atoh1 during
            inner ear development
  JOURNAL   Anat Cell Biol 44 (1), 69-78 (2011)
   PUBMED   21519551
REFERENCE   5  (bases 1 to 861)
  AUTHORS   Min,S.H., Simmen,R.C., Alhonen,L., Halmekyto,M., Porter,C.W.,
            Janne,J. and Simmen,F.A.
  TITLE     Altered levels of growth-related and novel gene transcripts in
            reproductive and other tissues of female mice overexpressing
            spermidine/spermine N1-acetyltransferase (SSAT)
  JOURNAL   J Biol Chem 277 (5), 3647-3657 (2002)
   PUBMED   11709547
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC164614.3.
            
            On Nov 17, 2006 this sequence version replaced NM_138304.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (a).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY061807.1, BC013541.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-58                AC164614.3         49193-49250         c
            59-89               AC164614.3         49082-49112         c
            90-230              AC164614.3         38537-38677         c
            231-419             AC164614.3         35900-36088         c
            420-861             AC164614.3         31436-31877         c
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 33.9 cM"
     gene            1..861
                     /gene="Calml4"
                     /gene_synonym="2010002G05Rik"
                     /note="calmodulin-like 4"
                     /db_xref="GeneID:75600"
                     /db_xref="MGI:MGI:1922850"
     exon            1..58
                     /gene="Calml4"
                     /gene_synonym="2010002G05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..517
                     /gene="Calml4"
                     /gene_synonym="2010002G05Rik"
                     /note="isoform a is encoded by transcript variant 1;
                     calmodulin-like protein 4; CALM-Rel; calmodulin-related"
                     /codon_start=1
                     /product="calmodulin-like protein 4 isoform a"
                     /protein_id="NP_612177.1"
                     /db_xref="CCDS:CCDS40664.1"
                     /db_xref="GeneID:75600"
                     /db_xref="MGI:MGI:1922850"
                     /translation="MAKFLSQDQINEYKECFSLYDKQQRGKIKATDLLVSMRCLGASP
                     TPGEVQRHLQTHGIDKNGELDFSTFLTIMHMQIKQEDPKKEILLAMLMADKEKKGYIM
                     ASELRSKLMKLGEKLTHKEVDDLFKEAGIEPNGQVKYDTFIQRITIPVRDY"
     exon            59..89
                     /gene="Calml4"
                     /gene_synonym="2010002G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            90..230
                     /gene="Calml4"
                     /gene_synonym="2010002G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            231..419
                     /gene="Calml4"
                     /gene_synonym="2010002G05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            420..861
                     /gene="Calml4"
                     /gene_synonym="2010002G05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      839..844
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Calml4"
                     /gene_synonym="2010002G05Rik"
                     /note="hexamer: AATAAA"
     polyA_site      861
                     /gene="Calml4"
                     /gene_synonym="2010002G05Rik"
                     /note="major polyA site"
ORIGIN      
        1 ccaagctgga gtaaagagaa ccaaactcag ttccaggagt aaggggagcc tgaggatggc
       61 caagttcctt tcccaggacc aaattaatga gtacaaggag tgcttctccc tgtacgacaa
      121 gcagcagaga gggaagatca aggccacaga tcttctggtg tccatgaggt gcctaggggc
      181 cagccccacg cctggggaag tgcagcggca cctgcagact catgggatag acaagaacgg
      241 agagctggac ttctccacct tcctgaccat catgcatatg caaatcaagc aagaggaccc
      301 aaagaaagaa atccttctgg ccatgctgat ggcagacaag gagaagaaag gttacatcat
      361 ggcgtctgag ctgcggtcga aactcatgaa actgggagag aagctcactc acaaggaagt
      421 ggatgatctt ttcaaggaag caggcattga accaaacggc caagtgaaat atgacacgtt
      481 tatccagagg atcaccattc ctgtgcgaga ctactaaggg agccaagatc aagagagcag
      541 atgagagcct tcggggcctg aaaacctaga ctgattcctt tttgtaaggg aagtctagag
      601 atgacacaac cactgcatgg cataagtacc aataaatgat gtagccatgg cattggataa
      661 ctgtaataag gtctgtcttg atttcggtac taacattagt ctagccattt gcagcatagt
      721 ctagccctat gatttgtagt cagggttgtg tgccagtgct gcctctgcaa catcatcccc
      781 tcacccattg tacttctcaa agcctttgga cctcataagg atgaagattg tgactgaaaa
      841 taaatggttg gcaacttcaa a
//
