LOCUS       NM_178908               1786 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus calcium homeostasis modulator family member 5
            (Calhm5), mRNA.
ACCESSION   NM_178908
VERSION     NM_178908.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1786)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1786)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK085925.1 and AK052861.1.
            
            On Feb 14, 2007 this sequence version replaced NM_178908.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK085925.1, AK052861.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849388 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-33                AK085925.1         1-33
            34-1786             AK052861.1         2-1754
FEATURES             Location/Qualifiers
     source          1..1786
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 18.85 cM"
     gene            1..1786
                     /gene="Calhm5"
                     /gene_synonym="Fam26e"
                     /note="calcium homeostasis modulator family member 5"
                     /db_xref="GeneID:103511"
                     /db_xref="MGI:MGI:2143897"
     exon            1..622
                     /gene="Calhm5"
                     /gene_synonym="Fam26e"
                     /inference="alignment:Splign:2.1.0"
     CDS             83..1012
                     /gene="Calhm5"
                     /gene_synonym="Fam26e"
                     /note="protein FAM26E; family with sequence similarity 26,
                     member E"
                     /codon_start=1
                     /product="calcium homeostasis modulator protein 5"
                     /protein_id="NP_849239.2"
                     /db_xref="CCDS:CCDS35879.1"
                     /db_xref="GeneID:103511"
                     /db_xref="MGI:MGI:2143897"
                     /translation="MDAFQSILKFFLNQKTAIGYSFMALLTVGSERLFSLVAFKCPCS
                     VENTAYGLVFLFAPAWVLLILGFFLNNKAWRLFTGCCMNPKKIFPRRRCCRFFYVLGH
                     IILSSLVAPVMWLSVALLNGTFYECAMSGTRSTRLLEMICKGKPKECWEELHKVSCGK
                     SSMAAMESEEVRLSLQAQSQILGWCLICSASFLSLLTTCYARCRSKVSYLQLSFWKTY
                     AQREKEQLENKLLECANKLSERNLKCFFENKKPDPFPMPSFGAWEAASELHSFHQDRE
                     HYSTLHKVVDDGMEQTPQEEETTMILVGTAQSL"
     exon            623..1786
                     /gene="Calhm5"
                     /gene_synonym="Fam26e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1698..1703
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Calhm5"
                     /gene_synonym="Fam26e"
                     /note="hexamer: ATTAAA"
     polyA_site      1722
                     /gene="Calhm5"
                     /gene_synonym="Fam26e"
                     /note="major polyA site"
ORIGIN      
        1 agccacagtt gctgtgctaa aaccaaggca aacgtctttc cctcttcgcg tgtgtgtgtg
       61 tgtgtgtgtg tgtgtctcca acatggatgc ctttcagagc atcttaaaat tctttcttaa
      121 ccaaaaaact gctattggct acagcttcat ggctttgctc accgtgggta gcgaacgtct
      181 cttctcgctg gtggcattta agtgcccctg cagcgttgag aatactgcct atgggctggt
      241 ttttctcttc gcccctgcct gggtgttact gatccttggc ttctttctga ataacaaggc
      301 atggagactc ttcactggct gctgtatgaa cccaaaaaaa atatttccca ggagacgctg
      361 ctgccgcttc ttctacgtcc tgggccatat catactgagt tcactggtgg ctccggtgat
      421 gtggctctct gtggctttgc ttaatgggac gttttatgaa tgtgctatga gcgggacaag
      481 aagcacaagg ctcctggaga tgatttgcaa gggcaagccc aaagagtgct gggaagaact
      541 gcacaaagtc tcctgtggta aaagtagcat ggccgctatg gagagtgaag aagtgaggct
      601 atccctgcag gcccagtctc agatcctagg atggtgcctg atttgttcgg cgtccttcct
      661 ctccctgctg accacttgtt atgcacgctg cagatctaaa gtcagctatc tgcagctgag
      721 tttttggaag acatatgcac aaagggagaa ggagcaactg gaaaacaaac tcctggaatg
      781 tgctaacaag ttaagtgaga ggaacctcaa atgctttttt gaaaacaaga agccagatcc
      841 ctttcccatg ccctcatttg gtgcctggga ggctgcatcc gagctacact ccttccatca
      901 agaccgtgag cactacagca ccctccacaa agtggtagat gatggtatgg aacaaacccc
      961 gcaagaggaa gaaacaacaa tgatccttgt gggtactgcc cagagtttgt gaatcatcta
     1021 ccattcctgg ctcagatatc tagtggtaca ctcattcgga gttgagtttt ctgctgtttc
     1081 catgacaacc tgagcctctg cattttctca ccatcagagc ttctttggaa gataacacag
     1141 tgggaaactg ttctgaagcc tcgaagagca atgtctggat gtgctcagac tgattgatgc
     1201 taagtgatga cagacacttt gagctggtgg agggttgtgt ccaggaggtc caacagttga
     1261 tccaagctct taagatttta taactcagcc cttagagtct ggcaagatgg tctgccacta
     1321 tttgtaagca tctgtcatgc tattctggga gaggtctgtg cccagtggta tccacatagt
     1381 ggccatcagg aacctttcag aaatatatcc aacacctttt aagttggaag gaattctgcc
     1441 atttaattaa cattcctttc tatagaatac ctctattccc aagactcact aaattgaaag
     1501 aatataatat ctaaaaatca gaggttcctg catttacccc aatttctgaa agtctgcctg
     1561 gaagagggct gccacataac tgctgtgggt gataggtact tataccatca caggacaatt
     1621 tctacattca aaagacaatc acataaggca taatacaaga ctgcattgat ataaagacaa
     1681 gtatgttaat attgtatatt aaagtagttt ttcacaaaaa aatccatttt ttctggtttt
     1741 aaaattgaaa atcattttta tggattccca ctaaaatttc tggtcc
//
