LOCUS       NM_001081165            3714 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus calcium homeostasis modulator family member 4
            (Calhm4), mRNA.
ACCESSION   NM_001081165 XM_194722
VERSION     NM_001081165.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3714)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3714)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC153962.3.
            
            On Feb 6, 2007 this sequence version replaced XM_194722.6.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK028763.1, BB612831.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN04095722 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-605               AC153962.3         10151-10755
            606-3714            AC153962.3         12572-15680
FEATURES             Location/Qualifiers
     source          1..3714
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 18.85 cM"
     gene            1..3714
                     /gene="Calhm4"
                     /gene_synonym="4732454E20Rik; Fam26d; Gm643"
                     /note="calcium homeostasis modulator family member 4"
                     /db_xref="GeneID:270711"
                     /db_xref="MGI:MGI:2685489"
     exon            1..605
                     /gene="Calhm4"
                     /gene_synonym="4732454E20Rik; Fam26d; Gm643"
                     /inference="alignment:Splign:2.1.0"
     exon            606..3714
                     /gene="Calhm4"
                     /gene_synonym="4732454E20Rik; Fam26d; Gm643"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3692..3697
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Calhm4"
                     /gene_synonym="4732454E20Rik; Fam26d; Gm643"
                     /note="hexamer: AATAAA"
     polyA_site      3713
                     /gene="Calhm4"
                     /gene_synonym="4732454E20Rik; Fam26d; Gm643"
                     /note="major polyA site"
ORIGIN      
        1 accatcagaa agagccacta gctggctgtg tcagagcttc cacgatgagc ccagatctca
       61 actgtatttc atcttctctg ctcagaagtg aaccgtgcat caattctttg atagcgattt
      121 tgactgtttg cggacagcaa ctgttctcct cttatacatt cagttgtccg tgtcaagtcg
      181 gaaaaaattt ctattatggt tcagcttttc ttgtggttcc tgccttgatc cttctgattg
      241 ctggctatgc tctacgaggc caaatgtgga cagttgccag cgagtactgc tgctgcagct
      301 gtacccctcc ataccggaga agcagccctc tggagaggag attggcttgc ctcatgttct
      361 tcgacatcac tgggagggct ctggttgctc cactgacatg gttgacggtg accctgctga
      421 caggtaccta ctatgaatgt gcagcaagtg agtttgcctc tgtggaccaa tacccgatgt
      481 ttgctaatgt cactcctagc aaacgagaag agatgctagc tggatttcca tgctacacgt
      541 cagctccctc tgatgtgatt ccaataagag atgaagtggc tcttctacac agataccagt
      601 cacaaatgct gggctggatt ctggtcgttt tggcaaccat tgctctcctg ctctccaaat
      661 gtctggcaag atgttgctct cccctcacct ctctgcagca tcactattgg accaatcacc
      721 tccacaacga gagagtgctc tttgagaaag ctgctgagga gcattcccaa cttcttatta
      781 gacatcgaat caagaaagta tttggcttcg ttcctgggag tgaagacatc aaacatattc
      841 gtatcccttc gtgtcaggac tggagagaaa tctctgtacc caatcttcta tgtgtgggtg
      901 acacctcaca gggtccctat agcttccttg gagacagggt ggttgaggaa aatgaggaag
      961 atagacaaga aggtattgaa atgaaacctt gagagctgca cctttcaaag ttcagggtgc
     1021 ctgatttttt ttttctttct gatgctagag tttcagtact accgctttct tttttttctc
     1081 tctgacactt atggacagaa gtccatccaa agtcctattt ccgaaatcaa tatatagagt
     1141 gagaagctct ccatctttat acagttccat cacatgctca tgatgactgt tgtgtcatga
     1201 ccgtccaatt tgtatgggca tgggaattta agtcaattgg aatttagctg tgttgctcgg
     1261 ctcgatactg gtgcaagcat caataatttg gagtgctatt ttgtcctatg cccataatag
     1321 ctccctcaga gagctattga gattaaatgt gatggcagga aacatttacc actctgcttt
     1381 tcatatggtg accacaaacc agcatcactt tcctctatcc tcttctaatt ccacctccta
     1441 tcagtccttg atctaatttt aggttttctc cttgtcttca tttaaataat acatttttat
     1501 taccttctcc atctggctta ctagagagga aggtagaatg aagtggtttt tctggagtgg
     1561 tacagtgagg aaggttttga gtaatgcgct gtgctcatgg tagatggtgg atcgatcatc
     1621 acattatcat tattagttat tagttattgg ttattggtta ttctcagcat cacagtaggg
     1681 gtgcctttat gacaacttct tataaacttt tttctaaagc ttcccttcta tgatccacaa
     1741 caggggtccc aactgtaact tttccttgtc aaattgttcc tttatgttcc caaacctctt
     1801 taaggaccta aggaatgaag ttttacaatt tctagttgtt tctcaaactc aaagcagcag
     1861 acacaatgag agggagagat gctggaagga tggctcattg ggtaagagca aatacttctc
     1921 tgctgaagaa cctgagtttg gtttataata cccatgtcag gtggcccatg ctacctgacg
     1981 ttccagatcc agggtatcta acacttctgg cctccacagg tacctgtctc acaggaccat
     2041 aaccccacag agaaacatac acataatttt aaaaataaat aaatagaacc tggggcaaga
     2101 tagacattag aaaatatgtc ttgattagag ttgtttcaaa cctgacttct gtcatgttca
     2161 cttaagcacc tggctcctgg gcccagcgag ggacctcagg gtttttgctt atttacttct
     2221 ttagccaaaa ttatttttga ttgccagaga accaactgct gatggtcatc ttgactttca
     2281 aggagatcaa ctaactggat tatctaaaat gccaccaatt tcttattgat gcatttgtat
     2341 acagttatga gaggttctat tttgtgtcaa attctgggag ctttgacttg acagaaacaa
     2401 gtaagaaggg atttttgaga aaacaaaatc ctttcaggag tttccctgat agaacattgc
     2461 ttagtgtgac actttgcttg gccaggaaat tgtcctgaac tcactgtcaa ccaatgataa
     2521 ccttatgaaa gtcagaccat ctctatgggg cctaatttgt tgatttgtaa agcagaacta
     2581 atgatgcctt atcttgcgga agtcaaggaa ctgaaccaaa tgaactactg aagctaattc
     2641 ataatctgat aaaatgttta tattcactgt tatgtaggtt aatcaatgga tacagagcag
     2701 tggttttcaa ccctcctaat cctgggaccc tttaatacag ttcctcatgt tgtgatgatc
     2761 ccccaaccag taaaattact tgtgttgcag cttcataact gtcattctgc tattgttaca
     2821 aatcataatg taactatctg tgttttccaa tggtcttagg tgacccctgt gaacgtgtca
     2881 ttcaactctt aaggagtcgt gccacacagg ttgaaaagca ctggtataca gtttttctgg
     2941 aatgatagta gacctatgtt gcctcttcac tgagttgtat ctttagcttt ctctaaaaga
     3001 catcaactgg cattctgctt ttggaagaac attaagagtg actttttttc aggtggcctg
     3061 gggaaggtag ctctacttta tctactgtgt actggggctg atacaatatt acaaaagcaa
     3121 tgttgaaaaa gtagctaaag tagatgtaca tagtagaagg ccactcagtt ccctccaata
     3181 ggaaagtcag tgaacaggga atgtctcatc cattttattc tcaaaattcc catgaggctg
     3241 agagttcttt gtctctactg agccaagagt tttataattt cgtctgtgct gacttactag
     3301 taaatgaatc atcctcacca aactcggaat tggtttatta gttttcagga ccttcaccac
     3361 aaagagactt ttcaataagg ttttcaatta acagcacaat caaagaatgt atgaagttat
     3421 agtgttacat caccaggaag attaatagtt gcttaggact taacaatagg aaacagcctc
     3481 tgacggcttc tgaagccctc tcctcaacaa actcaaacag agaaagctta ccttctgagc
     3541 cagttaatcg tggccatgac tttttggtaa aggagatggg gaattcctga tttacatggt
     3601 tctgaggaat tcctagcatc tatatgaatg catgaataat agcatatata cttgatattt
     3661 tattgcattg tgtatcatct atttcaaatg aaataaatcg ataccccacc ctct
//
