LOCUS       NM_138948               3029 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus calcium binding protein 7 (Cabp7), mRNA.
ACCESSION   NM_138948
VERSION     NM_138948.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3029)
  AUTHORS   Eguchi,T., Tezuka,T., Watanabe,Y., Inoue-Yamauchi,A., Sagara,H.,
            Ozawa,M. and Yamanashi,Y.
  TITLE     Calcium-binding protein 7 expressed in muscle negatively regulates
            age-related degeneration of neuromuscular junctions in mice
  JOURNAL   iScience 27 (2), 108997 (2024)
   PUBMED   38327785
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3029)
  AUTHORS   Schilling,K. and Oberdick,J.
  TITLE     The treasury of the commons: making use of public gene expression
            resources to better characterize the molecular diversity of
            inhibitory interneurons in the cerebellar cortex
  JOURNAL   Cerebellum 8 (4), 477-489 (2009)
   PUBMED   19554387
REFERENCE   3  (bases 1 to 3029)
  AUTHORS   McCue,H.V., Burgoyne,R.D. and Haynes,L.P.
  TITLE     Membrane targeting of the EF-hand containing calcium-sensing
            proteins CaBP7 and CaBP8
  JOURNAL   Biochem Biophys Res Commun 380 (4), 825-831 (2009)
   PUBMED   19338761
REFERENCE   4  (bases 1 to 3029)
  AUTHORS   Haeseleer,F. and Palczewski,K.
  TITLE     Calmodulin and Ca2+-binding proteins (CaBPs): variations on a theme
  JOURNAL   Adv Exp Med Biol 514, 303-317 (2002)
   PUBMED   12596929
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL606521.24.
            
            On Jun 21, 2019 this sequence version replaced NM_138948.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7974084.7719.1, BC104357.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-561               AL606521.24        164383-164943       c
            562-705             AL606521.24        158133-158276       c
            706-818             AL606521.24        157318-157430       c
            819-972             AL606521.24        156888-157041       c
            973-3029            AL606521.24        154656-156712       c
FEATURES             Location/Qualifiers
     source          1..3029
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 2.98 cM"
     gene            1..3029
                     /gene="Cabp7"
                     /note="calcium binding protein 7"
                     /db_xref="GeneID:192650"
                     /db_xref="MGI:MGI:2183437"
     exon            1..561
                     /gene="Cabp7"
                     /inference="alignment:Splign:2.1.0"
     CDS             453..1100
                     /gene="Cabp7"
                     /note="calcium-binding protein CaBP7; calneuron-2;
                     calneuron-II"
                     /codon_start=1
                     /product="calcium-binding protein 7"
                     /protein_id="NP_620398.1"
                     /db_xref="CCDS:CCDS24390.1"
                     /db_xref="GeneID:192650"
                     /db_xref="MGI:MGI:2183437"
                     /translation="MPFHPVTAALMYRGIYTVPNLLSEQRPVDIPEDELEEIREAFKV
                     FDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPKL
                     STSGIPEKFHGTDFDTVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENIIMTEEES
                     HLGTAEECPVDVETCSNQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK"
     exon            562..705
                     /gene="Cabp7"
                     /inference="alignment:Splign:2.1.0"
     exon            706..818
                     /gene="Cabp7"
                     /inference="alignment:Splign:2.1.0"
     exon            819..972
                     /gene="Cabp7"
                     /inference="alignment:Splign:2.1.0"
     exon            973..3029
                     /gene="Cabp7"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2898..2903
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cabp7"
                     /note="hexamer: AAGAAA"
     polyA_site      2930
                     /gene="Cabp7"
                     /note="major polyA site"
     regulatory      2991..2996
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cabp7"
                     /note="hexamer: TATAAA"
     regulatory      2999..3004
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cabp7"
                     /note="hexamer: CATAAA"
     polyA_site      3009
                     /gene="Cabp7"
     polyA_site      3029
                     /gene="Cabp7"
                     /note="major polyA site"
ORIGIN      
        1 agagcaagcg agcgagcgag tgaggagtgc aggcggcggc ggcggcggcg gtggcggcgg
       61 cggcggtggc ggcggcggcg gtggcggcag cggcgggagc cggagcggcg ggtcgggcag
      121 ccgcaccagc gagcggacga gcgggcggcg agcaacgcgg agcgcgcgga gggagcgcag
      181 cgcgcagcgg tccgagccaa gaggccggag cggcgccgcc cccgccatcc ctgcgagccc
      241 ccggccggga tcccaacgaa ggagccggcg gcatggcccg acagcccggg gcgcaggggc
      301 gctaggtccc ggacgggtgc ccattgcctc gccgccgcca ctgcgcgccg caccgcgcgc
      361 accgcccgct ccagccgccc ccggggccgc cggcggccca tgagccccgg cctcaaagtt
      421 tgcggcgggc gggcgggcgc ggagcctcca agatgccgtt ccacccggtg acggcggcgt
      481 tgatgtaccg gggcatctac accgtgccca acctgctgtc ggagcagcgc ccggtggata
      541 tccctgagga cgagctagag gagatccgag aggccttcaa ggtattcgac cgggatggca
      601 acggcttcat ctctaagcag gagctgggaa cagccatgcg ctccctgggt tacatgccca
      661 acgaggtgga gctggaggtt atcatccagc ggctagacat ggatggtgac ggccaagtgg
      721 actttgagga gtttgtaacc ctcctgggac ccaagctctc cacctcgggg atcccagaga
      781 agttccatgg cactgacttt gacacggtct tctggaagtg tgacatgcag aagctgacag
      841 tggatgagct gaagcggctt ctctatgaca ccttctgcga gcacttgtcc atgaaggaca
      901 tagagaacat catcatgaca gaggaggaga gccacctggg cactgctgag gagtgtcccg
      961 tggacgtgga gacctgttcc aaccagcaga tccgccagac gtgtgtgcgc aagagcctga
     1021 tctgcgcctt cgccatcgcc ttcatcatca gtgtcatgct catcgcggcc aaccaggtgc
     1081 tgcgcagcgg catgaagtag gcaccgcgtg ggtgcctgca gtgcccactc cacacccact
     1141 gctgcctgca gcccttcccc cagcttgctc cctgggccac cacccctggg cactttgagc
     1201 ctggacaatg accatcccaa tcctcacccc ttaggccttg catggagcca tggctcagct
     1261 gtggaggacc tggtggtggc tttgaggaca gccctagccc ccatcccctg cctgtgccct
     1321 cccctggcct gtgtgtagca ttcacttccc accactcagg agctcctgga agaggagggg
     1381 cttgtgcagg agcccccagg atccagttag tgctgcattc ttttaggcag gcaagaaact
     1441 catgtccaga acagtgggca gggtggaggt gggcagggct gaggctcctg ggtctccgac
     1501 actccttaga cccaaagcca gtcctccatg catcttctgg ggcctgtgcc tgaggtttta
     1561 agggcctgag atctggcttc ggattcttct tccacagggc ttttcaggaa aggcagatgc
     1621 tcatacaaga tggggcatga gagatagccc caaggcccat taatttctga gccatccacc
     1681 aaaggcttag agaccaaggg ccgaattgtc tcctagcaca gaacctagag gcccaactga
     1741 ggaaggaagc agaaatcctg tagctcgtgt gactccccac tggccagggt gtaaccctgg
     1801 gaggccctga gccattccct agggatctga gtcccctgag ggtctgccac agccctgcac
     1861 tgtcagtggt cacagactac tcttccaagt tcagggcctg ccctcttggg gaccccactt
     1921 ctctgtaccc tcgaggctgg cgacacagct ctcatgcttg ctccgcctgt gtcacgccgt
     1981 ttcttggcac cagctcagcc taggcagatg caagccttca gctcttcagg ggccgagatg
     2041 gttggcagtc ctcggctccc ttccccagcc tggggccact tactagctgg gccgccgcca
     2101 cactggcata cgctgtgccc agcctggctg ctctactgat ccctaagcac cctggagggg
     2161 acactgtctc attccagctc acctgtcccc tgatggaggc aggaggacag aaccaagagc
     2221 atgagaggca gcaagagaga caggccagcc atcaaggaca gactttttta taaacattcg
     2281 gatgtttctc acccatcttc ttgagaaacg ccctgaggga tggtgggtgg atgggcggcc
     2341 aggctcagag gccccaggga gaagggaggg aaggcagctc tgcttcctcg gttaggcaat
     2401 tgtctttact gtgactgatg agacaggttg aagtcaggca gggggaggtg aggaagagct
     2461 cagccccact ggactttgga cagtacggac caccctccag gtgggggtgc ccgcagggag
     2521 gggggcagct cctgcattgg cggccagccc actggatact ggaagacagt ggttctgatg
     2581 ggttcagccc tggagaggaa aaaggtagag gattagagca gagcacctca cagattccac
     2641 cttactcttc caacttcccg actgtcagaa acggtggtca cctgcacggc ccttctggaa
     2701 gtagaaccct gataacatgc agaacctctg agcccaaagt gggggctggt cgaggagact
     2761 caactaccag aatggccttg ggcaatatgg aactaccctt agcatccacc tgtggggact
     2821 ggttaaatat ttatgcacgt ccacagcaga gaatgctatg cagcctgtgt aaaaatcaag
     2881 gcctatatgc actgatgaag aaagatatac tatgtgagta aggagaaaaa gcagcttata
     2941 aaataatgta tatagcatga tactattttt gtttaaaaat atataacata tataaatgca
     3001 taaaaacaac cctggaagtt acagcgaaa
//
