LOCUS       NM_026908               3071 bp    mRNA    linear   ROD 09-FEB-2025
DEFINITION  Mus musculus calcium binding protein 39-like (Cab39l), transcript
            variant 3, mRNA.
ACCESSION   NM_026908
VERSION     NM_026908.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3071)
  AUTHORS   Lee,S., Bondaruk,J., Wang,Y., Chen,H., Lee,J.G., Majewski,T.,
            Mullen,R.D., Cogdell,D., Chen,J., Wang,Z., Yao,H., Kus,P.,
            Jeong,J., Lee,I., Choi,W., Navai,N., Guo,C., Dinney,C.,
            Baggerly,K., Mendelsohn,C., McConkey,D., Behringer,R.R., Kimmel,M.,
            Wei,P. and Czerniak,B.
  TITLE     Loss of LPAR6 and CAB39L dysregulates the basal-to-luminal
            urothelial differentiation program, contributing to bladder
            carcinogenesis
  JOURNAL   Cell Rep 43 (5), 114146 (2024)
   PUBMED   38676926
REFERENCE   2  (bases 1 to 3071)
  AUTHORS   Ferdaus,M.Z., Koumangoye,R.B., Welling,P.A. and Delpire,E.
  TITLE     Kinase Scaffold Cab39 Is Necessary for Phospho-Activation of the
            Thiazide-Sensitive NCC
  JOURNAL   Hypertension 81 (4), 801-810 (2024)
   PUBMED   38258567
REFERENCE   3  (bases 1 to 3071)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   4  (bases 1 to 3071)
  AUTHORS   Armfield,B.A., Seifert,A.W., Zheng,Z., Merton,E.M., Rock,J.R.,
            Lopez,M.C., Baker,H.V. and Cohn,M.J.
  TITLE     Molecular Characterization of the Genital Organizer: Gene
            Expression Profile of the Mouse Urethral Plate Epithelium
  JOURNAL   J Urol 196 (4), 1295-1302 (2016)
   PUBMED   27173853
REFERENCE   5  (bases 1 to 3071)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   6  (bases 1 to 3071)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   7  (bases 1 to 3071)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
REFERENCE   8  (bases 1 to 3071)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   9  (bases 1 to 3071)
  AUTHORS   VanBuren,V., Piao,Y., Dudekula,D.B., Qian,Y., Carter,M.G.,
            Martin,P.R., Stagg,C.A., Bassey,U.C., Aiba,K., Hamatani,T.,
            Kargul,G.J., Luo,A.G., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Assembly, verification, and initial annotation of the NIA mouse
            7.4K cDNA clone set
  JOURNAL   Genome Res 12 (12), 1999-2003 (2002)
   PUBMED   12466305
REFERENCE   10 (bases 1 to 3071)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY789575.1, AK030474.1, AK053642.1 and AW122324.1.
            
            On Feb 8, 2018 this sequence version replaced NM_026908.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK053642.1, AK030474.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5                 BY789575.1         1-5
            6-2249              AK030474.1         2-2245
            2250-3055           AK053642.1         2233-3038
            3056-3071           AW122324.1         1-16                c
FEATURES             Location/Qualifiers
     source          1..3071
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 31.48 cM"
     gene            1..3071
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /note="calcium binding protein 39-like"
                     /db_xref="GeneID:69008"
                     /db_xref="MGI:MGI:1914081"
     exon            1..56
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /inference="alignment:Splign:2.1.0"
     exon            57..204
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /inference="alignment:Splign:2.1.0"
     exon            205..272
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /inference="alignment:Splign:2.1.0"
     exon            273..414
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /inference="alignment:Splign:2.1.0"
     CDS             304..1317
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /note="mo25-like protein; MO25beta"
                     /codon_start=1
                     /product="calcium-binding protein 39-like"
                     /protein_id="NP_081184.3"
                     /db_xref="CCDS:CCDS27171.1"
                     /db_xref="GeneID:69008"
                     /db_xref="MGI:MGI:1914081"
                     /translation="MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSK
                     SLQAMKEILCGTNDKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFN
                     NILRRQIGTRCPTVEYISSHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIIL
                     FSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQ
                     SENYVTKRQSLKLLGELILDRHNFTIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHV
                     FKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKK
                     AAP"
     exon            415..579
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /inference="alignment:Splign:2.1.0"
     exon            580..698
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /inference="alignment:Splign:2.1.0"
     exon            699..867
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /inference="alignment:Splign:2.1.0"
     exon            868..927
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /inference="alignment:Splign:2.1.0"
     exon            928..993
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /inference="alignment:Splign:2.1.0"
     exon            994..1137
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /inference="alignment:Splign:2.1.0"
     exon            1138..3056
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1446..1451
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /note="hexamer: TATAAA"
     polyA_site      1472
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /note="major polyA site"
     regulatory      1485..1490
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /note="hexamer: AATATA"
     polyA_site      1504
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
     regulatory      3039..3044
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /note="hexamer: AATAAA"
     polyA_site      3056
                     /gene="Cab39l"
                     /gene_synonym="1500031K13Rik; 2810425O13Rik;
                     4930520C08Rik; MO2L"
                     /note="major polyA site"
ORIGIN      
        1 tcggcagcca agtgaggcac ttcgctggag tggtggcgca gcgctctctg cccgcggata
       61 agcatctaca gtgaagaaga aagaacatct ggtgctaagg tttagtttaa acctttactg
      121 gctgcttgga aaatgaagat gcagactcca gattggcgat ttatatattc ttcatgcaag
      181 ggcagcatac taaaagagag aaggagctgc gctgaccagt gactgaaagc tgtaagcact
      241 ggaacatatt tgcagaagac aggatttcta agcattccat attggaagaa gaggttttta
      301 tacatgaaaa aaatgccttt gtttagtaaa tcacacaaaa atccagcaga aattgtcaaa
      361 attctgaaag acaacctggc cattttggaa aagcaagaca aaaagacaga caaggcttca
      421 gaagaggtgt caaaatctct gcaagcaatg aaggaaattc tgtgtggaac gaacgacaag
      481 gagcccccta cagaagcagt ggctcagctg gcgcaggagc tctacagcag cgggttgctg
      541 gtgacactca tagctgacct gcagctcata gactttgagg gaaaaaaaga tgtgacccag
      601 atattcaaca acatcctgag aagacagatt ggtacacggt gtcctactgt cgagtacatc
      661 agttctcatc ctcacatcct gtttatgctt ctcaaaggct atgaagcccc acagattgcc
      721 ttacgctgtg ggattatgct aagagagtgt attcgacatg agccacttgc caaaatcatc
      781 ctattttcta atcagttcag agatttcttc aagtatgttg agctgtccac ctttgatatc
      841 gcttcagatg ccttcgctac ttttaaggat ttgttaacca gacataaagt attggtagca
      901 gacttcttag aacaaaatta tgacactatt tttgaagact atgagaaact gctgcaatct
      961 gagaactatg tgacaaagag acaatcttta aagttgctag gtgagctgat cctggaccgc
     1021 cacaatttca ccattatgac caagtatatc agcaagccag agaacctgaa actgatgatg
     1081 aacctgcttc gagacaaaag tcccaacatc caattcgaag ccttccatgt ctttaaggtg
     1141 tttgtggcca gcccccacaa aacgcagcct atcgtggaga ttctgttaaa aaatcagccc
     1201 aaactcattg agtttctgag cagctttcag aaagaaagga cagacgacga gcagtttgct
     1261 gacgagaaga actacctgat taaacagatt cgagacttga agaaagcagc cccgtgaaga
     1321 tggtcctgcc ccgacagcca tttgtctccc ttgcccagtg tgtacagtgt tgttttaaag
     1381 tctccattct taggaaggct ttggaggtcc tgtctttctc aattgattgt tcaaggtagt
     1441 tgaaatataa acatttgagt ggaagaaaaa aatcaaccta gaataatata ttcattttaa
     1501 tcaagcctgt gattgcttat ggaatcaacc attatattaa acattgatca aaagcagtgt
     1561 aagttcagag ctggaccctg ggtcacccag gacatcaagt caaggaacac aagtgtctct
     1621 taaaacagac gatgggagga gacccatctg tttagacagg ctttttcaga ccctgaagag
     1681 atgggagaca gcacagcatt gtctgctcag cgtgcacttt gcttctctgc ctgctgcctc
     1741 ctaggtggga acagtgcccg gctcccagct ccgtttcttc ttcattgtag cccttgtctg
     1801 acccatgacc catgcccatt ccaacttctg agggctagtc tggaagcagc tgagggccga
     1861 gtgagatcaa tagaggttac agggacagag acccatgggc tgtgactctc tcagaggaga
     1921 actgcaaaca ggtggctgta atcaccactg ttctgttggc acttctgccg ggtcaatgag
     1981 tgtgaggata tttcactaat agctgttgct atggaaagaa tgcttcctgg tgactgtctt
     2041 gagaggtgga atcacagtag gtacaaacca tggggctaga tggtcatgtt atccttccgt
     2101 cagtagaggg aaagtgagtc atgcataaca aatgtctcag acgaccagag gttctctctg
     2161 gttcagtttg ttctgtaata acctgtcatt ccatagccga ctatcagtgt cttcaatgag
     2221 aagctaaaaa atctaaaatt gttggttcca agtactctct ttcatgctag aataactaag
     2281 gtgttcattt gtgtcccctt aacagggaca ggaagaaaaa ttattttttt aaaggccatg
     2341 gtttgttttt agacttcata cctctaaaat ggacttttaa agagacattt cccaggcact
     2401 gaagctacaa ttgcttgtca gctcttcatg ccctgaattc ccatggcact ggactgctgt
     2461 cttccttgcc tttgggcaca tatgtcccca tccagagaca ggaatggaag tgtgtcctcc
     2521 agtacacacc ttgcttcttg actggggttc aagtgtttta cttccatgtt accccccccc
     2581 ccgagtcctg tattcttcag ttataaaagt cagatttttt tttataatat tccctggtag
     2641 tatagagccc cttagacctt gacctttcta gatttgctta tttgattaag agatgaaaaa
     2701 aacaaaacct ttaaatgtgt ttccatagca tcatgggaca caggcaaggc catgttttaa
     2761 tttaatttca gttaaaaaca cttcttttct ctgggtttga attggctctt tgccagcatc
     2821 cttttatcct agctgtgtac tttctggaca gaaagctaca gagtctgaga tgcagtgact
     2881 gaggtagctg gggtgctgct acgagtttct gagttagtca cttagaaggg gcacatgggg
     2941 ctcaccacca cggtgtgttt acacagagat cactgtaagt actgtgagac ttgaatgtgg
     3001 aaaggtcata gttaataaga agcacagttt aaagaccaaa taaaaagtac cacataaaaa
     3061 aaaaaaaaaa a
//
