LOCUS       NM_001364557            2594 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus expressed sequence C87436 (C87436), transcript variant
            7, mRNA.
ACCESSION   NM_001364557
VERSION     NM_001364557.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2594)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2594)
  AUTHORS   Friedel,R.H., Seisenberger,C., Kaloff,C. and Wurst,W.
  TITLE     EUCOMM--the European conditional mouse mutagenesis program
  JOURNAL   Brief Funct Genomic Proteomic 6 (3), 180-185 (2007)
   PUBMED   17967808
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC153374.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.142157.1,
                                           SRR7345562.3768364.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-174               AC153374.5         92029-92202         c
            175-423             AC153374.5         86901-87149         c
            424-1258            AC153374.5         84608-85442         c
            1259-1369           AC153374.5         83455-83565         c
            1370-1474           AC153374.5         81011-81115         c
            1475-1579           AC153374.5         77163-77267         c
            1580-1687           AC153374.5         72953-73060         c
            1688-1788           AC153374.5         68195-68295         c
            1789-1951           AC153374.5         64913-65075         c
            1952-2594           AC153374.5         60488-61130         c
FEATURES             Location/Qualifiers
     source          1..2594
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 37.69 cM"
     gene            1..2594
                     /gene="C87436"
                     /note="expressed sequence C87436"
                     /db_xref="GeneID:232196"
                     /db_xref="MGI:MGI:2141787"
     exon            1..174
                     /gene="C87436"
                     /inference="alignment:Splign:2.1.0"
     exon            175..423
                     /gene="C87436"
                     /inference="alignment:Splign:2.1.0"
     exon            424..1258
                     /gene="C87436"
                     /inference="alignment:Splign:2.1.0"
     CDS             436..2160
                     /gene="C87436"
                     /note="isoform 1 is encoded by transcript variant 7;
                     uncharacterized protein C2orf42 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C2orf42 homolog isoform
                     1"
                     /protein_id="NP_001351486.1"
                     /db_xref="CCDS:CCDS20313.1"
                     /db_xref="GeneID:232196"
                     /db_xref="MGI:MGI:2141787"
                     /translation="MEPNSQRTKVPAFLSDLGKATLRGIRKCPRCGTFNGTRGLSCKN
                     KTCGTIFRYGARKQPSIEAVKIITGSDLQVYSVRQRDRGPDYRCFVELGVSETAIQTV
                     DGTIITQLSSGRCYVPSCLKAATQGIVENQCQHIKLAVTCQAEATPLTLKSSVLNALQ
                     AAPETKQSLWQLATEPTGPLVQRVTKNIMVVKCKASQKHNLGYLHASFMQKISSRSLP
                     ERRFFCSCQTLRPHKSSVPKAEAAPKCIHFFACLCAFASDETLAQEFSDFLNFDASGL
                     KEIIVPHLGCHAESSVSACESAASKPRKRKKDEVSGAQVNSSLMPQDAVNSNLRKSGL
                     KRPVVTSSLKRHVCGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIP
                     QSFFDALQQRISIGSAKKRLPNSTTAFVRKDALPLGTFSKYTWHITNILQVKQILDTP
                     EMPLEITRSFIQNRDGTYELFKCPKVEVENIAESYGRIEKQPVLRPLELKTFLKVGNT
                     SPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVADYQDPRPPMDQPLELA
                     PLTTITFP"
     exon            1259..1369
                     /gene="C87436"
                     /inference="alignment:Splign:2.1.0"
     exon            1370..1474
                     /gene="C87436"
                     /inference="alignment:Splign:2.1.0"
     exon            1475..1579
                     /gene="C87436"
                     /inference="alignment:Splign:2.1.0"
     exon            1580..1687
                     /gene="C87436"
                     /inference="alignment:Splign:2.1.0"
     exon            1688..1788
                     /gene="C87436"
                     /inference="alignment:Splign:2.1.0"
     exon            1789..1951
                     /gene="C87436"
                     /inference="alignment:Splign:2.1.0"
     exon            1952..2594
                     /gene="C87436"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2564..2569
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C87436"
                     /note="hexamer: AATAAA"
     polyA_site      2594
                     /gene="C87436"
                     /note="major polyA site"
ORIGIN      
        1 gttttccagc cggccgttcc cggaagctga gcttaggcgc gctcccctaa acaacaccga
       61 ggaattgtgg cccggactct gttatttgac agtgaccggg ctgattctac aatcagtaaa
      121 ggtctgcgag ctgtgacgtc tcgatccaac cagacagttt tattcctaaa atgggctgcc
      181 aagagctcta cctagaggag ttggaatctg gaaccctgag caagagcttt gctagaaggg
      241 gatggaatgt ctgcaatgtt acatcagaac tcagccttca gaggacttag gccaagtggc
      301 acacctcact gcaaatgagc atgcctgggt ttgtgctgtc tgatcatcac aagctaatga
      361 accgcgttag gtctcacaga cacagcttcc actgttctcc gggtgccttg gcagctggta
      421 caggggctgt gaacaatgga accaaactct cagaggacta aagtcccagc tttcttatct
      481 gacttgggga aggccacact gaggggaatc aggaagtgtc cccgatgtgg tacgttcaat
      541 ggaacccgtg ggttgagctg taagaacaag acatgtggaa ccatatttcg ctatggtgcc
      601 cgaaagcagc ctagcattga agctgtcaaa atcatcaccg gctctgatct acaggtctac
      661 tctgtgcgac agagagaccg aggccccgac taccgatgct tcgtggagct cggtgtttcg
      721 gagactgcaa tccagaccgt ggatggtaca atcatcactc agctgagctc cggccgatgt
      781 tacgtcccct cgtgtttgaa agctgccact caaggcattg tggaaaacca gtgtcaacac
      841 atcaagctag cggtgacctg ccaggcggag gccacccctc tgaccctgaa gagctcagtc
      901 ctgaatgctc tgcaggctgc cccagaaacc aagcagagcc tctggcagct ggccaccgag
      961 cccacggggc ccctggtaca gagagtcact aaaaacatta tggtggtgaa atgcaaagcc
     1021 agccagaagc acaacttggg ctacttgcac gcgtccttca tgcagaagat cagctccaga
     1081 agcttgccgg agcgccgctt cttctgctcc tgccagactc tgaggccaca caagtccagc
     1141 gtccccaagg ctgaggcagc cccaaagtgc atccatttct ttgcttgtct ctgtgccttt
     1201 gccagcgatg agacattggc tcaggagttc tcggactttc tgaacttcga tgccagtggt
     1261 cttaaggaga taattgtgcc ccatttaggc tgccatgcag agtcatctgt ctcagcttgt
     1321 gagtctgctg cctctaagcc ccggaagagg aagaaggatg aagtgtctgg tgcacaggtg
     1381 aacagctcac tgatgccgca agatgcagta aacagcaatc taaggaagag tggcctgaaa
     1441 aggcctgtgg ttacgtcatc attgaaaagg cacgtctgtg gtcagctgtt agatgaggca
     1501 caagtgaccc tgtccttcca agactggctg gccagtgtca cagagcgcat ccatcaaacc
     1561 atgcactatc agtttgatgg caaaccagaa cccctggtgt tccacattcc tcagtccttt
     1621 tttgatgcct tgcaacagag aatatccata ggaagtgcaa agaagcggct ccccaactcc
     1681 actacagctt ttgttcggaa agatgccttg ccactgggaa ccttttccaa gtacacctgg
     1741 catatcacca atattctgca agtcaaacaa atcttagaca ccccagagat gcccctggaa
     1801 atcacacgta gctttatcca gaaccgggat ggaacttacg agctgtttaa atgccccaaa
     1861 gtggaagtag agaacatagc ggaaagctac ggccgcatag agaagcagcc tgtgctgaga
     1921 cctttggagc tgaaaacctt cctcaaagtt ggtaacactt ccccagatca aaaggagcca
     1981 acgcccttta tcattgagtg gatcccagat atcctcccac agtccaagat tggtgagctt
     2041 cgaatcaagt ttgagtatgg tcaccaccgg aatggacatg tggctgacta ccaggaccca
     2101 aggccaccca tggaccaacc tttggagctg gcccctctga ctactatcac tttcccttga
     2161 ggcaaatcaa gagtattttg cagagtttgc acatcccaat ccctgaggac tataaatcct
     2221 agtagcactt atacgatccc tgctaacgaa ccacacttgg ctaagatgca gttactcagc
     2281 ccatccatgt gtgttctgta gaagaaactc ttgtaaatag ccttgtgtgt acagtcttca
     2341 tacaagtcgg gcacttattt ctgaccagag ttttagaaga aacaacaaaa atccagctca
     2401 ctggcttctc atggattcac ctgcagcttg tttttctgta attctccaaa agtcacagca
     2461 ctggatctta gccaacagtg ttggaaagtt aacgatgccc tgggccgagc agggtcctct
     2521 ctctctgccc aagagctcca atcactcttt attctgataa caaaataaag tacagtgtca
     2581 ctagtttttc caaa
//
