LOCUS       NM_029909               2416 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA C330018D20 gene (C330018D20Rik), mRNA.
ACCESSION   NM_029909 XM_894494 XM_914864
VERSION     NM_029909.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2416)
  AUTHORS   Alvarez-Dominguez,J.R., Zhang,X. and Hu,W.
  TITLE     Widespread and dynamic translational control of red blood cell
            development
  JOURNAL   Blood 129 (5), 619-629 (2017)
   PUBMED   27899360
REFERENCE   2  (bases 1 to 2416)
  AUTHORS   Alvarez-Dominguez,J.R., Hu,W., Yuan,B., Shi,J., Park,S.S.,
            Gromatzky,A.A., van Oudenaarden,A. and Lodish,H.F.
  TITLE     Global discovery of erythroid long noncoding RNAs reveals novel
            regulators of red cell maturation
  JOURNAL   Blood 123 (4), 570-581 (2014)
   PUBMED   24200680
REFERENCE   3  (bases 1 to 2416)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CD561591.1, AK140255.1 and AC109152.14.
            
            On or before Aug 29, 2009 this sequence version replaced
            XM_914864.3, XM_894494.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK140255.1, SRR7345562.4191382.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-20                CD561591.1         1-20
            21-809              AK140255.1         2-790
            810-2416            AC109152.14        12417-14023
FEATURES             Location/Qualifiers
     source          1..2416
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 31.22 cM"
     gene            1..2416
                     /gene="C330018D20Rik"
                     /note="RIKEN cDNA C330018D20 gene"
                     /db_xref="GeneID:77422"
                     /db_xref="MGI:MGI:1924672"
     exon            1..46
                     /gene="C330018D20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            47..147
                     /gene="C330018D20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            148..265
                     /gene="C330018D20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             155..502
                     /gene="C330018D20Rik"
                     /note="glutaredoxin-like protein YDR286C homolog"
                     /codon_start=1
                     /product="glutaredoxin-like protein C5orf63 homolog"
                     /protein_id="NP_084185.1"
                     /db_xref="CCDS:CCDS50293.1"
                     /db_xref="GeneID:77422"
                     /db_xref="MGI:MGI:1924672"
                     /translation="MLWFQGKSLQIAKSSFGLLRNLSASNRALPVLTLFTKAPCPLCD
                     EAKEVLQPYKDRFILQEVDITLPENSTWYERYKFDIPVFHLNGQFLMMHRVNTSKLEK
                     QLRKLEQQVLATN"
     exon            266..322
                     /gene="C330018D20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            323..2416
                     /gene="C330018D20Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1139..1144
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C330018D20Rik"
                     /note="hexamer: TATAAA"
     polyA_site      1147
                     /gene="C330018D20Rik"
                     /note="major polyA site"
     regulatory      1204..1209
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C330018D20Rik"
                     /note="hexamer: AATGAA"
     polyA_site      1226
                     /gene="C330018D20Rik"
     polyA_site      2416
                     /gene="C330018D20Rik"
                     /note="major polyA site"
ORIGIN      
        1 gtgcggcggg cggaagccgc agcctggcgg cccgagcgag gcggagggat atacatcaga
       61 agaaaccaaa agccagctgg aatagttcct ggatgagatt ttattcctgt ttgcagttgt
      121 tttgaggggg gataccctct ggatcagaat taaaatgctc tggtttcaag gaaagagcct
      181 gcagattgcc aaatcctcct ttggactctt gagaaatctc tctgcctcta acagagctct
      241 gcctgtgttg accttattca caaaggcccc atgcccgctg tgtgatgaag ctaaagaagt
      301 tctccagccg tataaagaca ggtttatttt acaggaggtg gacatcacac ttccagagaa
      361 ttctacttgg tatgaacggt ataaatttga catccccgtc ttccatttga atggccaatt
      421 tctgatgatg catcgagtaa atacctcaaa gcttgaaaaa cagcttcgga aacttgagca
      481 gcaggtgctg gctacaaact gatattttct cattgatgca agtacccaga tgagaagttt
      541 acttctaggc atcttgtgaa ctaagaagag tacattgtag agcggggaag ctgtagggac
      601 gaagaggact acttgctgag tttacttttc cctttcgtga ccgtggatgt acttcccatg
      661 ctggacagtg ccctggttgg aagcaggctc tgcagtcctg ctgccgagca gccctggagc
      721 ctaactttag cggagtaaat gttcttacac tcgttaaaat agaatgtgaa ttcttaataa
      781 ctgtgcactg agaaagggat gttttaatga acacatctgc atgcagccta ttttagtgga
      841 atttaataac acctgtttaa aattagtgtt cacttttgtg gagtagaata gaataattgt
      901 cctagccaaa aaggcttcac ttcagaagga gaaaagagac ctaaacctgc agactgtgta
      961 tagcagactc aggtgttcat gtcatcatgg gattgatttg taatgttgag gactgcatta
     1021 agttatcaat taagttaatt caatgaattg taacatagta actttgtcaa atttttgtat
     1081 cttggaaatt attattttaa tcataactga acatacctaa gcataaagta tcgttttata
     1141 taaagtatta aacatgtgtt tttgtactct gatttatatt ttgtcaaatt tggcaaacat
     1201 ccgaatgaat tctcttaaca ccaaaactgt cttttttgct taaatcgcct ccctatgaag
     1261 ttctgtgaac tgtctgagtg tcagtaagtg ctcagggtga gttagtgtta gaattacaga
     1321 taatgtagcc caccaacctt agacattgtc cttacattat ccaggaagga gaatctaaag
     1381 ctcaaagagt tggaggaact tttccatggt cacccagcca ctcagccact gggccagaat
     1441 cttgacattt ctaatgttct ctggatttat gtagtggttc aaatacagca attccagcta
     1501 ctgtgggtac agcacaaagt aagccctcca aagtcactat ttaaaaatat tatgcttagt
     1561 attgccatgt tgtcatagta gctaggacag gtagagacta aagttaaaat agtgcttcat
     1621 attttgcttt atatttgttt atacttgctt tataattgct tatatcgagc tacagtattc
     1681 tataattcta acaccaactc acactgagtg cttacaggtc cagtggctca tgacacccaa
     1741 acagttcaca gaagttcata gggagctgat ttaagggaaa aaagacaatt ttttctttta
     1801 agtgaatacc ttctaataca tgccaaatct gacaaaatac aaacaaatat aaaatatgaa
     1861 caaaaatggt agacttttct caaactgaag aaatctacaa tatggctaga tgcagtggta
     1921 aacaccttta cttccagcac tcaggaagca aaatcagaca gatcagatct ctctgagttt
     1981 aaggccagcc tctacatagt aagccccaag atagcctgag ctacgtagtg agaccctttg
     2041 tcaaaaataa aaatacatct acaatgtact tacaaggtgg tcaaactgaa gtgggaattt
     2101 ctagtttctt tgaagaatca attgtatcat gtgatgtttt tctggaaact tatgagagaa
     2161 tatttttgct gaagcagaca tgtgaaagaa agttttgctg agaatagaca tgtagtgttt
     2221 ttctggaagc agcctggaaa gtgggtatgt gacgttttgc taaagtggat acttgaaaga
     2281 acacatgatg tttaaaaagg gtattaagta taatctaaca gacaatggac actgttgtat
     2341 ggcattggtt caccttgcca ctcttttctg gtcattgttt gtcatgactt catagaaaaa
     2401 aaaatgccac caaaaa
//
