LOCUS       NM_001136117            1347 bp    mRNA    linear   ROD 07-AUG-2024
DEFINITION  Mus musculus C2 calcium-dependent domain containing 4D (C2cd4d),
            mRNA.
ACCESSION   NM_001136117 XM_001001226
VERSION     NM_001136117.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1347)
  AUTHORS   Omori,H., Ogaki,S., Sakano,D., Sato,M., Umeda,K., Takeda,N.,
            Nakagata,N. and Kume,S.
  TITLE     Changes in expression of C2cd4c in pancreatic endocrine cells
            during pancreatic development
  JOURNAL   FEBS Lett 590 (16), 2584-2593 (2016)
   PUBMED   27349930
REFERENCE   2  (bases 1 to 1347)
  AUTHORS   Church,D.M., Goodstadt,L., Hillier,L.W., Zody,M.C., Goldstein,S.,
            She,X., Bult,C.J., Agarwala,R., Cherry,J.L., DiCuccio,M.,
            Hlavina,W., Kapustin,Y., Meric,P., Maglott,D., Birtle,Z.,
            Marques,A.C., Graves,T., Zhou,S., Teague,B., Potamousis,K.,
            Churas,C., Place,M., Herschleb,J., Runnheim,R., Forrest,D.,
            Amos-Landgraf,J., Schwartz,D.C., Cheng,Z., Lindblad-Toh,K.,
            Eichler,E.E. and Ponting,C.P.
  CONSRTM   Mouse Genome Sequencing Consortium
  TITLE     Lineage-specific biology revealed by a finished genome assembly of
            the mouse
  JOURNAL   PLoS Biol 7 (5), e1000112 (2009)
   PUBMED   19468303
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC164562.4.
            
            On Jan 13, 2022 this sequence version replaced NM_001136117.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CX212541.1, SRR14995043.486568.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN02415126
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-126               AC164562.4         163493-163618
            127-1347            AC164562.4         164427-165647
FEATURES             Location/Qualifiers
     source          1..1347
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 40.55 cM"
     gene            1..1347
                     /gene="C2cd4d"
                     /gene_synonym="Gm659"
                     /note="C2 calcium-dependent domain containing 4D"
                     /db_xref="GeneID:271944"
                     /db_xref="MGI:MGI:2685505"
     exon            1..126
                     /gene="C2cd4d"
                     /gene_synonym="Gm659"
                     /inference="alignment:Splign:2.1.0"
     exon            127..1347
                     /gene="C2cd4d"
                     /gene_synonym="Gm659"
                     /inference="alignment:Splign:2.1.0"
     CDS             209..1234
                     /gene="C2cd4d"
                     /gene_synonym="Gm659"
                     /codon_start=1
                     /product="C2 calcium-dependent domain-containing protein
                     4D"
                     /protein_id="NP_001129589.1"
                     /db_xref="CCDS:CCDS50983.1"
                     /db_xref="GeneID:271944"
                     /db_xref="MGI:MGI:2685505"
                     /translation="MWLLEKAGYRVRTAEARALQAHPSLVPKRQARGSPSRCNPNVLT
                     PDRIPQFFIPPRLRDPRGAEGRVDRNPGGRNLPVACSLPHLAGREGWAFLPESPHTRR
                     RESLFHGPRGLAAGLAPAQSRLHVSAPDLRLCRAPDSDTASSPDSSPCGSPHTPRPQS
                     LSPDEASSADTSPYAPRRAPPLFHLDFLCCQLRPTKDSVLRLGPRGGQLRLSTEYQAG
                     PGRLRLRLVSAEGLPRPRTRPGSGGGGCCVILRLQPRVRPGAQRSRVVQSSCNPIFNE
                     DFFFEGLRPPDLAVRSLRAKVLDRGAGLRRDVLLGECETPLIALLPPLAGGLGPGSSL
                     APTHLSL"
     regulatory      1325..1330
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C2cd4d"
                     /gene_synonym="Gm659"
                     /note="hexamer: AATAAA"
     polyA_site      1347
                     /gene="C2cd4d"
                     /gene_synonym="Gm659"
                     /note="major polyA site"
ORIGIN      
        1 cttgctctgt ggctgcggcc tggctgagaa gctagggata aagaggaggg gagagggggt
       61 ctgtgcctca tcgaaagaag ggaatctcct tggactggcc ctgcttgtct actggtcagc
      121 aatcagcgca cctcaggcca gagcctccag ccgggaggct gaacttggac cttctccgcc
      181 tcggtgttcc tttaccccca cccactgcat gtggctcttg gagaaagccg gttatagggt
      241 acggaccgca gaggcccggg cgctgcaggc gcaccccagc ctggtcccca agcgccaggc
      301 ccggggctcg ccctcgcgct gcaaccctaa tgtcctcacc cccgaccgca tcccacagtt
      361 cttcataccg cctcggctcc gggacccaag aggcgccgag ggcagggtgg accgcaaccc
      421 gggcggccgg aacctcccgg tggcctgctc gctgccgcac ctggcgggcc gcgagggctg
      481 ggccttcctg cccgagagcc cgcacacgcg tcgccgcgag tccttgttcc acgggccgcg
      541 cggcctggct gcaggcctgg ccccggcgca gtcacggctg cacgtctcgg cccccgacct
      601 ccgcctctgc cgggccccag acagcgacac ggcctcgtcg ccggactcct cgccctgcgg
      661 ctccccgcac acgcccaggc cgcagtccct gtcccccgac gaggccagct cggcggacac
      721 tagtccgtac gcgccgcgcc gtgcgccacc gctcttccac ctggacttcc tctgctgcca
      781 actgcggccg accaaggaca gcgtgctgcg cctggggccc cgcggcgggc agctgcgcct
      841 gtccaccgag taccaggcgg ggcccgggcg gctgaggctg cgcctggtga gcgccgaggg
      901 gctgcctcgg ccgcggaccc gccccgggag cggtggcggc ggctgctgcg tgattctgcg
      961 gctgcagccg cgcgttaggc ctggagctca gcggagccgg gtggtccaga gcagctgcaa
     1021 ccctatcttc aacgaagact tcttcttcga ggggctgcgc ccgccggatc tggccgtccg
     1081 cagtctgagg gccaaagtgc tggacagggg cgcggggctg cgcagggacg tgctgctggg
     1141 ggaatgtgag acgcccctca tcgccctgct gcccccactg gctggaggtc taggccctgg
     1201 gtcctccctg gcacctactc atctcagcct gtagactgat agacaccaca gctttcttgg
     1261 gaggtttcca ctgggtctgc agacttcatc cttgccacct gcccggcatg tatttatttt
     1321 tgttaataaa acatcagttt gtctcta
//
