LOCUS       NM_153155               4086 bp    mRNA    linear   ROD 17-SEP-2024
DEFINITION  Mus musculus C1q-like 3 (C1ql3), mRNA.
ACCESSION   NM_153155
VERSION     NM_153155.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4086)
  AUTHORS   Butts,J.C., Wu,S.R., Durham,M.A., Dhindsa,R.S., Revelli,J.P.,
            Ljungberg,M.C., Saulnier,O., McLaren,M.E., Taylor,M.D. and
            Zoghbi,H.Y.
  TITLE     A single-cell transcriptomic map of the developing Atoh1 lineage
            identifies neural fate decisions and neuronal diversity in the
            hindbrain
  JOURNAL   Dev Cell 59 (16), 2171-2188 (2024)
   PUBMED   39106860
REFERENCE   2  (bases 1 to 4086)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 4086)
  AUTHORS   Chen,F., Sarver,D.C., Saqib,M., Zhou,M., Aja,S., Seldin,M.M. and
            Wong,G.W.
  TITLE     CTRP13 ablation improves systemic glucose and lipid metabolism
  JOURNAL   Mol Metab 78, 101824 (2023)
   PUBMED   37844630
  REMARK    GeneRIF: CTRP13 ablation improves systemic glucose and lipid
            metabolism.
REFERENCE   4  (bases 1 to 4086)
  AUTHORS   Lee,Y., Yeo,I.S., Kim,N., Lee,D.K., Kim,K.T., Yoon,J., Yi,J.,
            Hong,Y.B., Choi,B.O., Kosodo,Y., Kim,D., Park,J. and Song,M.R.
  TITLE     Transcriptional control of motor pool formation and motor circuit
            connectivity by the LIM-HD protein Isl2
  JOURNAL   Elife 12, e84596 (2023)
   PUBMED   37869988
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 4086)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 4086)
  AUTHORS   Wei,Z., Peterson,J.M. and Wong,G.W.
  TITLE     Metabolic regulation by C1q/TNF-related protein-13 (CTRP13):
            activation OF AMP-activated protein kinase and suppression of fatty
            acid-induced JNK signaling
  JOURNAL   J Biol Chem 286 (18), 15652-15665 (2011)
   PUBMED   21378161
  REMARK    GeneRIF: CTRP13 reduces glucose output in hepatocytes by inhibiting
            the mRNA expression of gluconeogenic enzymes, glucose-6-phosphatase
            and the cytosolic form of phosphoenolpyruvate carboxykinase.
REFERENCE   7  (bases 1 to 4086)
  AUTHORS   Wang,Q., Chow,J., Hong,J., Smith,A.F., Moreno,C., Seaby,P.,
            Vrana,P., Miri,K., Tak,J., Chung,E.D., Mastromonaco,G., Caniggia,I.
            and Varmuza,S.
  TITLE     Recent acquisition of imprinting at the rodent Sfmbt2 locus
            correlates with insertion of a large block of miRNAs
  JOURNAL   BMC Genomics 12, 204 (2011)
   PUBMED   21510876
  REMARK    Publication Status: Online-Only
REFERENCE   8  (bases 1 to 4086)
  AUTHORS   Bolliger,M.F., Martinelli,D.C. and Sudhof,T.C.
  TITLE     The cell-adhesion G protein-coupled receptor BAI3 is a
            high-affinity receptor for C1q-like proteins
  JOURNAL   Proc Natl Acad Sci U S A 108 (6), 2534-2539 (2011)
   PUBMED   21262840
REFERENCE   9  (bases 1 to 4086)
  AUTHORS   Iijima,T., Miura,E., Watanabe,M. and Yuzaki,M.
  TITLE     Distinct expression of C1q-like family mRNAs in mouse brain and
            biochemical characterization of their encoded proteins
  JOURNAL   Eur J Neurosci 31 (9), 1606-1615 (2010)
   PUBMED   20525073
REFERENCE   10 (bases 1 to 4086)
  AUTHORS   Koide,T., Aso,A., Yorihuzi,T. and Nagata,K.
  TITLE     Conformational requirements of collagenous peptides for recognition
            by the chaperone protein HSP47
  JOURNAL   J Biol Chem 275 (36), 27957-27963 (2000)
   PUBMED   10862616
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL929209.17.
            
            On Sep 30, 2022 this sequence version replaced NM_153155.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB044560.1, ERR3363658.1578172.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1421              AL929209.17        35109-36529         c
            1422-4086           AL929209.17        26629-29293         c
FEATURES             Location/Qualifiers
     source          1..4086
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 9.68 cM"
     gene            1..4086
                     /gene="C1ql3"
                     /gene_synonym="1110065A22Rik; Adij; C1ql; C1qtnf13;
                     CTRP13; K100"
                     /note="C1q-like 3"
                     /db_xref="GeneID:227580"
                     /db_xref="MGI:MGI:2387350"
     exon            1..1421
                     /gene="C1ql3"
                     /gene_synonym="1110065A22Rik; Adij; C1ql; C1qtnf13;
                     CTRP13; K100"
                     /inference="alignment:Splign:2.1.0"
     CDS             834..1601
                     /gene="C1ql3"
                     /gene_synonym="1110065A22Rik; Adij; C1ql; C1qtnf13;
                     CTRP13; K100"
                     /note="adiponectin j; gliacolin; complement C1q-like
                     protein 3; C1q/TNF-related protein 13; C1q and tumor
                     necrosis factor-related protein 13"
                     /codon_start=1
                     /product="complement C1q-like protein 3 precursor"
                     /protein_id="NP_694795.1"
                     /db_xref="CCDS:CCDS15692.1"
                     /db_xref="GeneID:227580"
                     /db_xref="MGI:MGI:2387350"
                     /translation="MVLLLVILIPVLVSSAGTSAHYEMLGTCRMVCDPYGGTKAPSTA
                     ATPDRGLMQSLPTFIQGPKGEAGRPGKAGPRGPPGEPGPPGPVGPPGEKGEPGRQGLP
                     GPPGAPGLNAAGAISAATYSTVPKIAFYAGLKRQHEGYEVLKFDDVVTNLGNHYDPTT
                     GKFTCSIPGIYFFTYHVLMRGGDGTSMWADLCKNNQVRASAIAQDADQNYDYASNSVV
                     LHLEPGDEVYIKLDGGKAHGGNNNKYSTFSGFIIYAD"
     exon            1422..4086
                     /gene="C1ql3"
                     /gene_synonym="1110065A22Rik; Adij; C1ql; C1qtnf13;
                     CTRP13; K100"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1793
                     /gene="C1ql3"
                     /gene_synonym="1110065A22Rik; Adij; C1ql; C1qtnf13;
                     CTRP13; K100"
                     /note="major polyA site"
     regulatory      3964..3969
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C1ql3"
                     /gene_synonym="1110065A22Rik; Adij; C1ql; C1qtnf13;
                     CTRP13; K100"
                     /note="hexamer: AATAAA"
     polyA_site      3988
                     /gene="C1ql3"
                     /gene_synonym="1110065A22Rik; Adij; C1ql; C1qtnf13;
                     CTRP13; K100"
                     /note="major polyA site"
     regulatory      4064..4069
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C1ql3"
                     /gene_synonym="1110065A22Rik; Adij; C1ql; C1qtnf13;
                     CTRP13; K100"
                     /note="hexamer: ATTAAA"
     polyA_site      4086
                     /gene="C1ql3"
                     /gene_synonym="1110065A22Rik; Adij; C1ql; C1qtnf13;
                     CTRP13; K100"
                     /note="major polyA site"
ORIGIN      
        1 ctcctcttct cctggcaggt ggtacccagg cagaattctg cgttcagctc tctcgttcag
       61 cttttcggcg gcgaggctct cgatgctgct ggctagctcc tatctcctct gtccctgagc
      121 ttctctgagc cgcggatcct gcgaattgcc attgctccgc gcatctcagg ggcctcccga
      181 ccccaagcaa ccgcagccct ctagggttgg ggggtgcgtt tctgttggag ttgcaggaga
      241 aaaagaaaga aagaaagaaa gaaaaaaaaa agagacaagg acagacgaac caagccaaca
      301 aaagaaaagc aagaagcaga aaaaaaaaaa agggcaactt cagacagaaa gttggtgaga
      361 actggcgcag tctgcaaaaa aggaaaagtc gatcacgggc agcagcggca taaaagtgtg
      421 agctgctccg gacgagcgca gcaggcggca gctggctttg ccctccgggt ggccgctccg
      481 gcacccgccg cagccacagg tgcgaagggg ctggcaggag gcgagagggc gccctgagca
      541 cccctccccc caacccccac ccccagctcg ggacttcagt tcaagtcact tggcgcccca
      601 gctccctccc tagccgcagc ctcagcgggg gggagcagga gccggtcaag agcgaccggc
      661 gcgcgcccgc ccaggggagt tggggttcga agggggattg ttttcggctc tgaagaggtc
      721 cccgcccaac cttcaaaatt ttgtccaaaa gcagacaaga ggatcggccc gcgctgagcc
      781 ggctcgtggg cagcaggagg cgcctgatcg ccgccggggc gctgggggtg gtgatggtgc
      841 ttctgctggt catcctcatc ccggtgctgg tgagctcggc cggcacgtcg gctcactacg
      901 agatgctggg cacctgccgc atggtctgcg acccctatgg gggcaccaag gctcccagca
      961 ccgccgccac tccggaccgg ggccttatgc agtccctgcc cactttcatc cagggtccca
     1021 aaggcgaggc cggtaggccg gggaaggcag gcccgcgtgg gcccccggga gagcccggac
     1081 cgccgggccc cgtggggccc ccgggcgaga agggagagcc gggtcgccaa ggcttgcccg
     1141 gcccgcctgg ggcgcccggc ctgaacgcgg ccggggctat cagtgcagcc acctatagca
     1201 cggtgcccaa gatcgccttt tacgctggcc tcaaacggca gcacgaaggc tacgaggtgc
     1261 tcaagttcga cgacgtggta accaatctcg gaaaccacta tgatcccacc acgggcaagt
     1321 tcacctgctc cataccgggt atctacttct tcacctacca cgtcctgatg cgcggagggg
     1381 acggcaccag catgtgggct gatctctgca aaaacaacca ggtgcgtgct agtgcaattg
     1441 ctcaagatgc tgatcagaat tacgactatg ccagtaacag tgtggtcctt cacctggaac
     1501 caggagatga agtctatatc aaattagatg gtgggaaagc ccacggagga aacaacaaca
     1561 aatacagcac attctctgga tttattattt atgctgactg ataatgcaga gactgagctt
     1621 gctgttctga gtttgaacgc tggattcgta tggctaacgt cagtgaatca aggatcccag
     1681 gggatgccca ttgctgggca tctcagttgt gtaaatgtgg ggagatcaaa tgctacctga
     1741 ctcacatctg tatcactcag acacattatg taaaaaaaaa gtatttaacg caagataagc
     1801 agatgtgtga tccactaccg ccaaagcaaa tactccttat tgttagtgtc catgtgaatg
     1861 aagtcctata tagaccacaa atttttatag aaaaatctaa gacactgagt tatttcttca
     1921 atatctatga tactttggtg tcctgtgatc ttgctgcttt attcacgtgt cagctttggt
     1981 tcttgtgagt ttacctgctt attattaagc tacttggagt ctatttgtag tatagggagg
     2041 agtcattttt ccctgcagga gaaggtctaa ttgaagtaat gctgcttgtc cccaaagata
     2101 ctgtttgcct tgtactctgg ttatctttag agctagacct gggaatgatt caacttgaag
     2161 ccttaacctg gaattttctg gatttgtgga attcccaagc ctgtgatcat tttcacattt
     2221 tttttctttt catgtgaatt ttcttttctc tctcttttct ggtgatggtc tctatctttt
     2281 tttttttaaa tagagattga aattgtatca taggattccc ctctaagtgt gaaaatgtat
     2341 aattatgtac ggtatttaga aaaaaaaacc tgtgtgtcca tttctccaat agaatacatt
     2401 tagactctct tgaacagtca gagaaattta ttctttggta tgaagtcaga tggaggcttt
     2461 tgccttcttt ggaacaaaag atcgttcata acctaaggca caaaagttta acttgagcta
     2521 ctgcatgcgt caccaagggg acactaagta aggccttcaa acagttacca caaatctgta
     2581 gcctgaggtt atttcaaaat taacagtttc acatagaacc gacatgacaa caaagtgtat
     2641 atattttata taaatatctg ccacacactt atttatatac atatatgtta gatgaaaata
     2701 ttatatatat atatggcttc agtccactaa gcacagtggc tgtacagctc aaaaatgaat
     2761 ttaaaaagta tatatgtata cacacagaac catgcacaaa ttattcgact tattttagat
     2821 caaaatatat tttagatgat accaatacat agagtagcaa aataataaag gtgacttctc
     2881 tttaagagtt attcagaaag tcaaatcaca gtagattcca gtgccctatg tcacacatga
     2941 gacctagttg atcccatggt aactgtgttc cacatgcaat ccatacttca tctgcattct
     3001 ttggcagacg actattacag gactttagga agcaagtagc tctctcttac aatggtaatg
     3061 aaacatacac atttgagcag ccaattattt ttttctttct gttggattga agctgatagt
     3121 gtagtgcgaa cccattctcg ctagttacaa cacactgcca agagccatct ctttggtgta
     3181 aggggaagat caaaatgcat acgaacatgt cctactcaca cacaattccc cctcttacag
     3241 tggaaaatct gttccccttt cagttgcctt taaacattct ttgacaagta gatttcaaag
     3301 ccagagattt aaaactctgc ttggtttact ggggaaggac atttgcattt taacctttaa
     3361 aggaactggg ctgttctttt ggctcactca actttggtac tttctgttct aatatacaga
     3421 gagcttgatc agctatgatc aacagaaata gctttagttt agcaaacctt gacttttcca
     3481 agagttatgc atggtgttcc catctaaagg tggtgtttgc tgtatttaaa tgccttggtc
     3541 tgagtaactg tcgtgattta tatgataaaa acacttagat cattcatcaa gaatagtgac
     3601 taattcgatt tggcccttct aatatgtaag gtaattcacc aatgaattgc tacactttta
     3661 acttctattt aacagcatat acttatggat tgcaagcaag ggattaaaga tttgtcttgg
     3721 gtaccaaatc acataacgag gattcaaagg attaacttat aaacaacagt gttcatcaat
     3781 taagcatttt aactaacatt ttgaaaaggc tttattagaa aagaacttca tggctggatc
     3841 tcttctaaag agtagtgttt acaaacagac tgtcatttcc aatagacctg accttttctt
     3901 tagataagta agcattattt tctctgttta ggccggagaa aaaaagaaat aaaaggtaca
     3961 tgaaataaaa ggactatata taaggcaagc atttctcttt ttctttgcat tataacatga
     4021 attaattaaa ttgtggcctt tgttataata actgtaatga ttcattaaac tatattatgt
     4081 aatata
//
