LOCUS       NM_145472               1774 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA C030006K11 gene (C030006K11Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_145472
VERSION     NM_145472.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1774)
  AUTHORS   Pagliarini,D.J., Calvo,S.E., Chang,B., Sheth,S.A., Vafai,S.B.,
            Ong,S.E., Walford,G.A., Sugiana,C., Boneh,A., Chen,W.K., Hill,D.E.,
            Vidal,M., Evans,J.G., Thorburn,D.R., Carr,S.A. and Mootha,V.K.
  TITLE     A mitochondrial protein compendium elucidates complex I disease
            biology
  JOURNAL   Cell 134 (1), 112-123 (2008)
   PUBMED   18614015
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK140578.1, AK165937.1 and BC026997.1.
            
            On Nov 1, 2008 this sequence version replaced NM_145472.1.
            
            Transcript Variant: This variant (1) encodes the longer protein
            (isoform 1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC019462.1, AK165937.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164133
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-7                 AK140578.1         2-8
            8-1758              AK165937.1         2-1752
            1759-1774           BC026997.1         1733-1748
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 36.28 cM"
     gene            1..1774
                     /gene="C030006K11Rik"
                     /gene_synonym="1110033I13Rik"
                     /note="RIKEN cDNA C030006K11 gene"
                     /db_xref="GeneID:223665"
                     /db_xref="MGI:MGI:1925941"
     exon            1..191
                     /gene="C030006K11Rik"
                     /gene_synonym="1110033I13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..686
                     /gene="C030006K11Rik"
                     /gene_synonym="1110033I13Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     UPF0598 protein C8orf82 homolog"
                     /codon_start=1
                     /product="UPF0598 protein C8orf82 homolog isoform 1"
                     /protein_id="NP_663447.1"
                     /db_xref="CCDS:CCDS27591.1"
                     /db_xref="GeneID:223665"
                     /db_xref="MGI:MGI:1925941"
                     /translation="MWPPSGAVRNLALVLARSQRARTCSGVERVSYTQGQSPEPRTRE
                     YFYYVDHQGQLFLDDSKMKNFITCFKDLQFLVTFFSRLRPNHSGRYEASFPFLSLCGR
                     ERNFLRCEDRPVVFTHLLASDSESPRLSYCGGGEALAIPFEPARLLPLAANGRLYHPA
                     PERAGGVGLVRSALAFELSACFEYGPSSPTVPSHVHWQGRRIALTMDLAPLLPAAPPP
                     "
     exon            192..240
                     /gene="C030006K11Rik"
                     /gene_synonym="1110033I13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            241..1759
                     /gene="C030006K11Rik"
                     /gene_synonym="1110033I13Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1732..1737
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C030006K11Rik"
                     /gene_synonym="1110033I13Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1759
                     /gene="C030006K11Rik"
                     /gene_synonym="1110033I13Rik"
                     /note="major polyA site"
ORIGIN      
        1 actgtgtgat ccgcttccgg tgtggaagaa tgtggccgcc tagtggggca gtgcgtaact
       61 tggctctagt cttggcgagg tcgcagagag ctcggacctg cagtggggtc gagcgtgtct
      121 cctacacaca gggtcaaagc ccggagccca gaacccgcga gtatttctac tatgtggatc
      181 accaaggcca gcttttccta gatgactcca aaatgaagaa ctttatcacc tgcttcaaag
      241 acctgcagtt cctggtcact ttcttctccc gtctgagacc caaccacagc gggcgctacg
      301 aggcttcctt ccccttcctc tcgctttgcg gcagagagcg taacttcctg cgctgtgaag
      361 accggccagt ggtcttcacg cacctcctgg cttccgacag cgagtcacct cgtctctcct
      421 actgtggcgg tggcgaggcg ctggcgatac ccttcgagcc ggctcgcttg ctacccctgg
      481 cggccaatgg gcgcctgtac cacccggccc cggagcgcgc aggcggtgtg ggtctagtgc
      541 gctcggccct ggccttcgag ctcagcgctt gcttcgagta tgggcctagc tcccctacgg
      601 tcccctctca cgtacactgg caaggtcgcc gcatcgccct aactatggat ctggccccgc
      661 tgctgcccgc tgccccgccg ccctgagact ccagctgggg ctgtgtgggg agggttagag
      721 caaactctgg gttttgtagt actcgcaggt tacccctctg ctccaacact ctagattaac
      781 ttagatgtcc gctgtcacct gcacgctggt gactgagagc gcgtgcgcgc agaggtgagc
      841 ccagggtggt tggcgctgtc caaggttctg gtgctgccct gctatcctct gtccctacag
      901 aggtcctctc tcggccacct ctaaccctta caccggcttt gcgtcccacg gattggcctg
      961 cgctggtcac gtcaggcagg gcggcaggcg caaggcgcgc gtgggccggt gcgcgtgcgc
     1021 gcccacccca acccccccct ccgcttctcc agtcttgcag ccgcaagcac cgcggggagt
     1081 cgctcgccac tggagcaggt gagggggtgg ggggagatcc tggcccaagg tcaccgggct
     1141 tgggggcggg atcgggaccc tctaggttct gactgcctca ccgagaaaag gtcataggat
     1201 ctggcagtgg gaaggggatg gaaaccacac cctcaatgag caggctcgga cccactggaa
     1261 cgggaggggg cggttagggg aggtagtgct gcttaaaagc gccggatcgc aggggctgcc
     1321 agagacctcc gctgggcccg acagaggaca caggactcct ccccaccctc ttcccgccta
     1381 gataggcatc caagagaccg acaccccact cctgctcagg attagaggtt catgtcctga
     1441 taaaaggatc tctgctgggc tcatctaata aggggccctt attcctgaca tggctgtctt
     1501 gctctggtgc acatctgggc ctctgcataa gcagcagctc tgatccctaa tgcacagatc
     1561 aaggctttgc tactgaaggc tgaacagctg tgcaaggcct ggagccaggg accaaccagt
     1621 cattcgtgtt ccaggaaata aaacccagaa acctagcaag cgtccccact tcttggggct
     1681 ccacatgtcc tgagatctag gaactgcctt tgcctgcgcc aaagctattc cattaaaact
     1741 ttactgctgt gctgcctcaa aaaaaaaaaa aaaa
//
