LOCUS       NM_172793               2463 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus butyrophilin-like 9 (Btnl9), mRNA.
ACCESSION   NM_172793
VERSION     NM_172793.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK084528.1.
            
            On Apr 6, 2007 this sequence version replaced NM_172793.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK084528.1, AK080918.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2463              AK084528.1         2-2464
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 29.18 cM"
     gene            1..2463
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /note="butyrophilin-like 9"
                     /db_xref="GeneID:237754"
                     /db_xref="MGI:MGI:2442439"
     exon            1..102
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            103..229
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..1734
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /note="butyrophilin 3; butyrophilin-like protein 9"
                     /codon_start=1
                     /product="butyrophilin-like protein 9 precursor"
                     /protein_id="NP_766381.1"
                     /db_xref="CCDS:CCDS24600.1"
                     /db_xref="GeneID:237754"
                     /db_xref="MGI:MGI:2442439"
                     /translation="MADFSVFLGFLKQIPRCLSIFFTYLLFLQLWEVNSDKVWVLGPE
                     ESILARVGEAVEFPCRLSSYQDAEHMEIRWFRAQVSNVVYLYQEPQGRSSLQMAQFRN
                     RTLFEAYDIAEGSVNLHILKVLPSDEGRYGCRFLSDNFSGEATWELEVAGSGSDPHIS
                     LQGFSGEGIQLQCSSSGWYPKPKVQWRGHQGQCLSPESEAITQNAQGLFSLETSVIVR
                     GGAHSNVSCIIQNPLLPQKKEFVIQIADVFLPRMSPWKKAFVGTLVVLPLSLIVLTML
                     ALRYFYKLRSFQEKQVKQGEEVREKLQTELDWRRSEGQAEWRAAQQYAADVTLDPATA
                     HPSLEVSNNGKTVSSRLGVPSIAAGDPQRFSEQTCVLSRERFSSGRHYWEVHVGRRSR
                     WFLGACLESVERSGPARLSPAAGYWVMGLWNRCEYFVLDPHRVALALRVPPRRIGVLL
                     DYEAGKLSFFNVSDGSHIFSFTDTFSGALRAYLRPRAHDGSEHPDPMTICSLPVRGPQ
                     VLEENDNDNWLQPYEPLDPAWAVNEAVS"
     exon            230..577
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            578..859
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            860..988
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            989..1021
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1042
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1043..1069
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1070..1096
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1097..2463
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2085..2090
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /note="hexamer: AATACA"
     polyA_site      2110
                     /gene="Btnl9"
                     /gene_synonym="B430208I01; Btn3; D330012D11Rik"
                     /note="major polyA site"
ORIGIN      
        1 agcttagcat cagggactaa catttcacaa tcaccccctt tagagggagg tgagattgcc
       61 agcatccctc taccgcttgg atcttcttct gttacctgaa aggtgggccc tcaccgctga
      121 cagatggcag atttctcagt atttctgggg tttctgaagc aaatacctcg gtgcctcagc
      181 atcttcttca cctaccttct cttccttcag ttgtgggagg tgaactcaga caaggtctgg
      241 gtgttgggcc ctgaggagtc cattttggcc cgcgtcgggg aagcggtgga gttcccatgt
      301 cgcttatcat cataccaaga cgcagagcac atggaaattc gctggtttcg ggcccaggtc
      361 tccaacgtgg tgtacctgta ccaggagccg caggggcgct ccagcctgca gatggcacag
      421 ttccgaaaca ggaccttatt tgaagcctat gacattgcag agggaagcgt gaacctacac
      481 atccttaaag tgcttccctc cgacgagggc cgatatgggt gccgctttct ttctgacaac
      541 ttctctggtg aagccacgtg ggagctggaa gtagcaggat cgggctcaga cccacacatc
      601 tccctccagg gcttcagtgg agaaggtatt cagctgcagt gcagttccag tggctggtac
      661 cccaagccaa aggttcagtg gagaggtcac cagggtcagt gcctttctcc agagtctgaa
      721 gccatcaccc agaatgccca aggcctgttc agtctggaga catccgtgat tgtccgagga
      781 ggagcccata gcaatgtgtc ttgtataatc cagaacccct tgctgcccca gaagaaagaa
      841 ttcgtgatcc agattgcaga tgtgttccta cccagaatgt ccccctggaa gaaagcgttt
      901 gtgggaaccc tggtggtcct gccgctcagt ctgattgtgc tcaccatgct ggcgctgcga
      961 tatttttaca agctgcggag cttccaagaa aaacaggtga agcagggaga ggaggtccga
     1021 gagaaacttc agacagagct tgactggaga aggtctgaag gccaggctga gtggagagca
     1081 gcccagcaat atgcagcgga tgtgaccttg gatcctgcca cagcgcaccc tagcctggag
     1141 gtctccaaca acggcaagac cgtgtcctcc cgcctggggg tgcccagtat tgcagctggg
     1201 gacccgcagc ggttctcgga gcagacctgc gtgctgagcc gggagcgctt ctccagcggc
     1261 cgccactact gggaggtgca cgtgggccgg cgcagccgct ggttcctggg cgcctgtctg
     1321 gagtcggtgg agcgctccgg gcccgcgcgc ctgagcccgg cggctggcta ctgggtgatg
     1381 gggctgtgga accgctgcga gtacttcgtg ctggacccgc atcgcgtggc actggcgcta
     1441 cgcgtgcctc cccggaggat aggcgtcctg ttggactacg aggccgggaa gctgtctttc
     1501 ttcaacgtgt ctgatggctc gcacatcttc agcttcaccg acactttctc aggggcgctc
     1561 cgcgcctact taaggccccg agctcacgac ggcagtgaac atccggatcc tatgaccatc
     1621 tgctctttgc cggttagagg gccacaggtc ctcgaagaga acgacaacga caactggcta
     1681 cagccctatg agcctctgga ccccgcctgg gctgttaatg aggcagtgtc ctgacctcaa
     1741 ggccaggtcc aagcactgtc ctgaactcct ggacagcgct ttgctctcct gcagccaaag
     1801 cagagtcagc agaaagagga cagagagaga gggcctatac agatgaatgt atataattat
     1861 ctttaaacag acaaatgaaa gattgtttgt gtatatagca ggattctgga gtgtgcagtg
     1921 tagaagatgg gaaagaatca taattatccg ctaatgtgtg tatagttctg tatagtgtat
     1981 atgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtaatttt gtggatcctg caaaagtcta
     2041 gaagtaatgt catttcataa gcaatgagtt cacctttggc tcagaataca gtttatagcg
     2101 acttccttga tcatgtatgt ggcaattcga acatgaaatt caataatggc agtgatgtgg
     2161 ctggctgggg gtaagcagtg gtagagtgct tgcctagccc gagggatagc acacatcttc
     2221 aacttcactg ccgatttccc cagaaaagtg cattggatcc cccgctcagg tggagcagga
     2281 taaggatggc aggaatgcag cgatactcct aaaacataaa catacatata agtaacattt
     2341 acaaacagaa aaggctatat ttagcaaaat ataagtatat acatatactc atctaatatc
     2401 attaatttta aaagccatga ttttgaaaga gagctagaag tgaggcatag gagaatttga
     2461 ggg
//
