LOCUS       NM_030746               2802 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus butyrophilin-like 4 (Btnl4), mRNA.
ACCESSION   NM_030746 XM_001471566 XM_006524760
VERSION     NM_030746.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2802)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2802)
  AUTHORS   Jandke,A., Melandri,D., Monin,L., Ushakov,D.S., Laing,A.G.,
            Vantourout,P., East,P., Nitta,T., Narita,T., Takayanagi,H.,
            Feederle,R. and Hayday,A.
  TITLE     Butyrophilin-like proteins display combinatorial diversity in
            selecting and maintaining signature intraepithelial gammadelta T
            cell compartments
  JOURNAL   Nat Commun 11 (1), 3769 (2020)
   PUBMED   32724083
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2802)
  AUTHORS   Di Marco Barros,R., Roberts,N.A., Dart,R.J., Vantourout,P.,
            Jandke,A., Nussbaumer,O., Deban,L., Cipolat,S., Hart,R.,
            Iannitto,M.L., Laing,A., Spencer-Dene,B., East,P., Gibbons,D.,
            Irving,P.M., Pereira,P., Steinhoff,U. and Hayday,A.
  TITLE     Epithelia Use Butyrophilin-like Molecules to Shape Organ-Specific
            gammadelta T Cell Compartments
  JOURNAL   Cell 167 (1), 203-218 (2016)
   PUBMED   27641500
REFERENCE   4  (bases 1 to 2802)
  AUTHORS   Stammers,M., Rowen,L., Rhodes,D., Trowsdale,J. and Beck,S.
  TITLE     BTL-II: a polymorphic locus with homology to the butyrophilin gene
            family, located at the border of the major histocompatibility
            complex class II and class III regions in human and mouse
  JOURNAL   Immunogenetics 51 (4-5), 373-382 (2000)
   PUBMED   10803852
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT009767.6.
            
            On or before Sep 21, 2022 this sequence version replaced
            XM_006524760.2, NM_030746.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN00849376, SAMN00849377
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-334               CT009767.6         34412-34745         c
            335-430             CT009767.6         33280-33375         c
            431-781             CT009767.6         31431-31781         c
            782-1066            CT009767.6         30333-30617         c
            1067-1267           CT009767.6         30019-30219         c
            1268-1288           CT009767.6         29793-29813         c
            1289-1315           CT009767.6         29684-29710         c
            1316-1342           CT009767.6         28406-28432         c
            1343-1369           CT009767.6         27488-27514         c
            1370-2802           CT009767.6         25773-27205         c
FEATURES             Location/Qualifiers
     source          1..2802
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 18.06 cM"
     gene            1..2802
                     /gene="Btnl4"
                     /gene_synonym="Btn3a3; EG632126; NG11"
                     /note="butyrophilin-like 4"
                     /db_xref="GeneID:632126"
                     /db_xref="MGI:MGI:1932036"
     exon            1..334
                     /gene="Btnl4"
                     /gene_synonym="Btn3a3; EG632126; NG11"
                     /inference="alignment:Splign:2.1.0"
     exon            335..430
                     /gene="Btnl4"
                     /gene_synonym="Btn3a3; EG632126; NG11"
                     /inference="alignment:Splign:2.1.0"
     CDS             346..2106
                     /gene="Btnl4"
                     /gene_synonym="Btn3a3; EG632126; NG11"
                     /note="butyrophilin, subfamily 3, member A3"
                     /codon_start=1
                     /product="butyrophilin-like 4 precursor"
                     /protein_id="NP_109671.1"
                     /db_xref="CCDS:CCDS50077.1"
                     /db_xref="GeneID:632126"
                     /db_xref="MGI:MGI:1932036"
                     /translation="MENHRKPSLLFHVPCLFVLTQLLSWVTTQEFRVFGPSDPIVAAP
                     GGEAILPCSVFPAMNVENMEELRWFRSRFSEAVLFYRDQEEQKEGQMPGYSQRTLLVK
                     DQFHQGTAAVRILNVQASDSGIYICHFQQGVFYDEAILELKVAAMGSVPEVHIKGPED
                     GGVCVVCMTSGWYPEPQVHWKDSRGENLTAFSSETHTKDAEGLFSTETLLVVRDSSVR
                     NVTCSIFNPILGQEKATAMFIPEPFFPQASPWKPAFLVTLTMMGLLVLGTSYLLRREH
                     SARLKVQQETVNFQREKDESLKTRDDALRTAGALMVERDRRKAAYRAAWKKAQLYADW
                     RKEHFEAWTFTLDPASAHPILAISPDRLSVSRKDSTLCLDDLFCVLGIRGISSGRHYW
                     EVKLRNGDSSKWTLGVCREGVDRKGCFSECPHKGFWTVGRSSSGYLAYIDTGTALLSL
                     RQAPQSVGVFVDYTEGDISFYNMSDMSPMFSFHEASFSGTLFPYFRLKSGNVSMIIQS
                     MACASEGREGEDRRRGRKRSRKGRKGKRTKRGKKLVLLPLEESLSPAGEGLVPGSCVV
                     DSFPEEVSPFLQHARNSLFP"
     exon            431..781
                     /gene="Btnl4"
                     /gene_synonym="Btn3a3; EG632126; NG11"
                     /inference="alignment:Splign:2.1.0"
     exon            782..1066
                     /gene="Btnl4"
                     /gene_synonym="Btn3a3; EG632126; NG11"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..1267
                     /gene="Btnl4"
                     /gene_synonym="Btn3a3; EG632126; NG11"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..1288
                     /gene="Btnl4"
                     /gene_synonym="Btn3a3; EG632126; NG11"
                     /inference="alignment:Splign:2.1.0"
     exon            1289..1315
                     /gene="Btnl4"
                     /gene_synonym="Btn3a3; EG632126; NG11"
                     /inference="alignment:Splign:2.1.0"
     exon            1316..1342
                     /gene="Btnl4"
                     /gene_synonym="Btn3a3; EG632126; NG11"
                     /inference="alignment:Splign:2.1.0"
     exon            1343..1369
                     /gene="Btnl4"
                     /gene_synonym="Btn3a3; EG632126; NG11"
                     /inference="alignment:Splign:2.1.0"
     exon            1370..2802
                     /gene="Btnl4"
                     /gene_synonym="Btn3a3; EG632126; NG11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccatcttct ctgctgctgt ctctcttgtc ctcatggtgg acactgtgcc tgccctgtct
       61 ccacagctgc tgtctctgta gtcatcgtgg tctctggaga ggctgtgaca acttgagtca
      121 ggctgcactt cttgtctgct gccctagaaa ccatgatcct ggacctgagg caacccaagg
      181 ctggcactga ggcgagcaga gcttagagct gtgagaacct cttggagagg ggatgaagtg
      241 tgagaagagg atttggggtc tgctgggtcc ccttggccct gagcttctcc tgatgaagtc
      301 acagcctttc aaagctgggg gcaaagaaaa gcagttctgc tggacatgga aaatcaccgc
      361 aagccctctc tgctcttcca tgtcccctgt ctgtttgtcc ttacacagct gcttagctgg
      421 gtgaccacac aggagttccg ggtctttggt ccctcagacc ccattgtggc tgcaccaggt
      481 ggggaagcca tccttccctg ctccgtgttt ccagccatga atgtggagaa catggaagag
      541 ttgaggtggt tccgcagcag attctcagaa gcagtacttt tctatcggga ccaagaggag
      601 cagaaggaag ggcagatgcc tgggtattca cagcgcacct tgctggtgaa ggaccagttc
      661 catcaaggca cagctgctgt gaggatccta aatgtccagg catcagatag tgggatatac
      721 atctgccact tccagcaagg agtgttctat gatgaggcca tcttggaact gaaggtggca
      781 gcaatgggct ctgtccctga agtgcacatc aaaggtccag aagatggtgg agtgtgtgtt
      841 gtgtgcatga cctcagggtg gtacccggag cctcaggtgc attggaaaga ctccagagga
      901 gagaatctca cagcattctc ctcagagacc cacactaaag atgctgaagg actgttcagc
      961 acagagacct tgctggttgt gagagacagc tctgtgagga atgtgacctg ctccatcttc
     1021 aatcctatct tgggccagga gaaagccaca gccatgttca tcccagagcc cttcttccct
     1081 caggcctctc cctggaagcc agcttttctt gtgaccctga ccatgatggg actactagtc
     1141 ttagggacaa gctatcttct cagaagggag cattctgcaa ggctgaaggt gcagcaggaa
     1201 acggtgaatt ttcagcgtga gaaggatgag tcactgaaga caagggatga tgctctgagg
     1261 actgctggcg cactcatggt ggagcgtgat cgaaggaaag cagcttacag ggcagcttgg
     1321 aagaaggccc agctctatgc agattggcgc aaggagcact tcgaggcctg gactttcact
     1381 ctggatccag cctctgccca ccccatcctt gccatctccc cagacaggct gagtgtgagc
     1441 cggaaggatt ccactctgtg cttggatgac ctcttctgtg tgttaggcat cagaggcatc
     1501 tcttctggaa gacattactg ggaggtgaag ctaaggaatg gtgacagcag caagtggact
     1561 ctgggggtct gtagggaagg tgtggacagg aaaggctgtt tctcagagtg tccacataag
     1621 gggttttgga ctgtggggcg gtctagtagt ggatatttgg cttatattga cactgggaca
     1681 gctttattat ctctcaggca agctccgcag agtgtggggg tgtttgtgga ctacactgaa
     1741 ggtgacatct ccttctataa catgagtgac atgtccccca tgttctcctt ccatgaggct
     1801 tccttctctg ggactctttt tccatacttc aggcttaagt ctggaaatgt ttcaatgatt
     1861 atccaatcca tggcatgcgc atctgagggg agggagggag aagacagaag gagaggaagg
     1921 aaaagaagta ggaaggggag gaaggggaag aggacaaaga gggggaagaa attagttttg
     1981 cttcctttgg aggagtctct gagtcctgca ggggagggcc tggttccagg ctcttgtgtt
     2041 gtggattctt ttccagagga agtctctcca ttccttcagc atgccaggaa ctctctgttc
     2101 ccatagtgtg aaccactgcc taagtcgtca gtgtggctcc ttgtgggaat gtagaagcca
     2161 cagaccaaag cccgcatggg tcctggaagg gcctggagcc ttgacccact gctcttcagt
     2221 ctgactcagg ctgaggctgt ggctgtggct gaggctgtgg ctgtggctgt ggctgtggct
     2281 gtggtggcag cgaggtcatg ctttggtgca tgataagtgc tgactttgtg taaaacaggc
     2341 tactttgagc tctgggaagg cattttcctc ctggtggtaa atagcatttt attagttttg
     2401 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtcattt ggcatgaaac agaccaaggg
     2461 ctgagtgaac attatttaat ttgttcatct ggccatgggc acctagggtc ttggctcttg
     2521 tggccagtat tgtagtgagt atgggggaag agatgtctga cacatgactt cctgacttct
     2581 acatttgttc ctggtgatga gattgctgga tcctagatag ttcctcgaag tggaccttct
     2641 cagtggacaa tgacctgtct gtccatccat ctccatgaac ctgccttatc atcatatcag
     2701 atctgtcttt gattcttaca taaattcttt gatttctatg tttgagtctc tctcttacag
     2761 aattacacat atagctacaa acattaattc atattttata aa
//
