LOCUS       NM_001363414            4400 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus butyrophilin-like 10 (Btnl10), transcript variant 1,
            mRNA.
ACCESSION   NM_001363414 XM_006532532
VERSION     NM_001363414.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4400)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK143638.1 and AL662809.14.
            
            On May 18, 2018 this sequence version replaced XM_006532532.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK143638.1, SRR5189685.25805.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN00849388
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-749               AK143638.1         2-750
            750-766             AL662809.14        4787-4803
            767-2529            AK143638.1         768-2530
            2530-4400           AL662809.14        9210-11080
FEATURES             Location/Qualifiers
     source          1..4400
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 36.37 cM"
     gene            1..4400
                     /gene="Btnl10"
                     /gene_synonym="BUTR-1; Butr1"
                     /note="butyrophilin-like 10"
                     /db_xref="GeneID:192194"
                     /db_xref="MGI:MGI:2182073"
     exon            1..285
                     /gene="Btnl10"
                     /gene_synonym="BUTR-1; Butr1"
                     /inference="alignment:Splign:2.1.0"
     exon            286..372
                     /gene="Btnl10"
                     /gene_synonym="BUTR-1; Butr1"
                     /inference="alignment:Splign:2.1.0"
     CDS             288..1766
                     /gene="Btnl10"
                     /gene_synonym="BUTR-1; Butr1"
                     /note="variant 1 precursor is encoded by transcript
                     variant 1; butyrophilin-like protein BUTR-1; butyrophilin
                     related 1; butyrophilin-like protein 10"
                     /codon_start=1
                     /product="butyrophilin-like protein 10 variant 1
                     precursor"
                     /protein_id="NP_001350343.1"
                     /db_xref="CCDS:CCDS88163.1"
                     /db_xref="GeneID:192194"
                     /db_xref="MGI:MGI:2182073"
                     /translation="MARAHPGDATLPSILVSFIFLQLLTSGNGKSDFLVLGPPHPLLA
                     IVGQDKELPCKLSLNISAEGMELRWYRDKPSSVVHVYKNGEDVYDEQMVEYKGRTSFN
                     GSHVARGEAAVKIHNVTVFDNGTYHCVFKEYTSHSQATLWLKVAGRGSSPRIRVTDTQ
                     DKGIRAECTSAGWYPEPKVEWLDLKGQPVSAESHFSVSASTGLVALLSIVTPQDTAVG
                     GLTCSISNPLLPEKVTETYLLASLSRRPLSTESGPALPLILTALGLVSAAIACAFGKC
                     HKEEHKTNQEEEDPGARDEAGLFHVSLSLDPETASPKLMVSEDQKSVKRLLFDQDVFP
                     SSRRFNQDPCILAQERFEAGRHYWEVEVGDRRAWILGVCLESLVREGRIPKSPQHGLW
                     ALEFYKKKLQALSYPRTCLSPPEPLRRVGILLDFEAGQISFYNSTNGSLIYVFSGFSF
                     SGPLQPFFCLWTHDPRPLTICSVVTETKDTESSGDPGLPGDS"
     exon            373..726
                     /gene="Btnl10"
                     /gene_synonym="BUTR-1; Butr1"
                     /inference="alignment:Splign:2.1.0"
     exon            727..1005
                     /gene="Btnl10"
                     /gene_synonym="BUTR-1; Butr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1006..1188
                     /gene="Btnl10"
                     /gene_synonym="BUTR-1; Butr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1189..4400
                     /gene="Btnl10"
                     /gene_synonym="BUTR-1; Butr1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1839..1844
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Btnl10"
                     /gene_synonym="BUTR-1; Butr1"
                     /note="hexamer: TATAAA"
     polyA_site      1861
                     /gene="Btnl10"
                     /gene_synonym="BUTR-1; Butr1"
                     /note="major polyA site"
     regulatory      4066..4071
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Btnl10"
                     /gene_synonym="BUTR-1; Butr1"
                     /note="hexamer: AATAAA"
     polyA_site      4091
                     /gene="Btnl10"
                     /gene_synonym="BUTR-1; Butr1"
                     /note="major polyA site"
ORIGIN      
        1 cagtacagct ggccatatgc cccttaggga gggttttttt ttttcctgtc gaaactgccc
       61 ttaccgaagg taagagttaa ttattttctg atggcagtaa ccagactcaa cagaagctgg
      121 tgagcttgtc tgttcttcag tttctaggtt cccctctcat atcgctggga ggcgaggctt
      181 gatcacttgg cttgtgccct gccaatctga aattctcagg gaacccaacc aactctgacg
      241 ctctcaaagt cagcagaacc tggaaagcag gcagccggct cagagatatg gcaagggcac
      301 accctggaga tgctactctg ccaagcatct tggtcagctt catcttcctg caactcctga
      361 cttctgggaa cggaaaatca gatttcctcg tccttggacc tccccaccca cttctggcca
      421 tagttggtca agacaaagag ttgccctgca aactgtcact caacatcagc gctgagggca
      481 tggagctgag gtggtacagg gacaagccct cgtcagtcgt gcatgtgtac aagaatgggg
      541 aggatgtgta tgacgagcag atggtggaat ataagggaag gacctcattc aacggcagcc
      601 atgtagccag gggagaagct gctgtgaaga tccacaacgt caccgtgttt gacaacggga
      661 cttatcactg tgtgtttaag gagtacacat cccacagcca ggccaccctg tggctgaagg
      721 tggcagggcg gggctcgtcc cccagaatcc gtgtgactga cacccaggac aaaggcatcc
      781 gggccgagtg cacctcagca ggctggtacc ccgagcccaa ggtggagtgg ctggacctta
      841 aaggacaacc agtgtctgct gagagtcact tctcagtttc agccagcact ggcctcgtgg
      901 ccctgctctc cattgtgact ccccaggata cggctgtggg gggcctgact tgctccatct
      961 ccaatcccct cctcccagag aaggtgacag agacttacct gctggcctcc ctgtccagaa
     1021 ggcctctgtc cacggaaagc ggaccagctc tgcctttgat cctcacggca ctagggctgg
     1081 tttcagcagc aatagcctgt gcctttggga aatgtcacaa agaagagcat aaaacaaatc
     1141 aggaagagga ggatccagga gcccgtgatg aggccgggct cttccacgtg agtctgtccc
     1201 tggatcctga aaccgccagt cccaaactca tggtgtctga ggatcagaaa agcgtgaagc
     1261 ggctgctatt tgaccaggac gtattcccca gttccaggag atttaaccag gacccctgca
     1321 tcctggctca agagcgattt gaggcaggga gacattactg ggaagtggag gttggggaca
     1381 ggagggcctg gattctgggt gtgtgtctag agagtttggt acgggaagga aggatcccca
     1441 agtcacccca gcatggcctc tgggcactag agttttacaa gaagaaactc caagccctct
     1501 cctacccccg gacttgcctg tctcctccag agcccctccg gcgggtgggc atcctcttag
     1561 actttgaggc agggcaaatc tccttttata attcaaccaa tggctccctg atctatgtgt
     1621 tctctgggtt ctccttttct ggtcccctgc agccattctt ctgcctctgg acccatgacc
     1681 ccagacccct caccatctgc tcggtggtca cagagaccaa agacacagaa tcttctggag
     1741 atcccggcct ccctggggac tcctgagatg tccttaagag aggaaagctc ctgccttctt
     1801 gtgcctccta actcctggca ctatctatcc cattcctata taaaaatatg atgaaacacc
     1861 aggggctggc tatgctcccc ctaccaaatt tctgtgccaa atgctgacac cacccaccag
     1921 ggtcagggat ttctgaaggc attgtaattt ggagatgaga cattgaaaaa gattgtggat
     1981 aaggggagtc atttatgtac cttaacctca tagatctggt actcttataa gaaggaagat
     2041 taggactcgg agagatgcca ctcactagcc aaggagatca gcaatgccct ggtctcatat
     2101 ttgtagcctc tgggacctag aaagtggttc ctgccaagtg agaatcctgg gaatctccta
     2161 tgttgccttc tttactatgg ctgccctctc tcagtgaggc aaactataca atcattcctg
     2221 ccatgtagtt agagtgtatg tatgtatgta tgtatgtatg tatgtatgta tgtatgtatg
     2281 tatgtatata tttatgtatg tatgtgtgta tgtatgtatg tatgtatgta tgtatgtatg
     2341 tatgtatgta gaccatccag cccagtggtg ggtgtgttgt ggttgcacag taaataatag
     2401 tcgtaccctc ccttctcact ctctctccat cttgttcatc tctcactcgt tcacttcctc
     2461 tctttcctct ctctccttcc caccttctct ttccttctgt taaatgattt tattattttg
     2521 cattatgtag atgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     2581 gtgtgtctgc gcacacaggt gcggtgccca cagaggccag aggatagcat ccgatcccct
     2641 ggaactggag ttagagagtt tatgcgttga cagagggtgc tgggaacaaa actccattct
     2701 tttgcaacag cagccagggc tcttaatcat agaaccatct ctccagtccc tctcccttcc
     2761 cttgtttctt ttcttcctcc tccaatctat ttctacctaa atccctttct ttcactcacg
     2821 gtgacagact agttcaagtc acacaaaagc aaagatccca agattcctaa gactttggtc
     2881 agagttcagt gaggacagaa accacatcca tattgaaaga gaaaacagat gagaagtggg
     2941 ttttaatgga cacttgagaa cacaagtgct ggacccagct ctcggctccc tgagaatctt
     3001 ccattccaag actgcggcag cagaagagcc cagggagtgg ggtgctgctc cgtggtgcct
     3061 gttccatagg gactgagaaa aacgctctat ctagtgctgt gaagctggtg gccccaagag
     3121 aaacagagtc tcaccatcct gcagacccaa cattccctct tgctgtttgt tgcaagttca
     3181 agcagggatt gttggtgtga ttgatctggt tggtgatcag gacccccact ccaaggggcc
     3241 tggggctttt aggttaagag ctctggccta aaagccacta gtgactcttc cctctaaatt
     3301 ctggagacca gaaatctgaa ctgaagtcag attgtcaggg ttggcttctc ctgaaagcat
     3361 gggaaaacca ggcctccctt ccagtgtctg gaggagtcct cttagctggc agtcacatca
     3421 ctgcaaatgc tggccctgtg gtcatatggc cagctcttct ctggttctcc ttaaacattt
     3481 tctcttagca atccaactca gagcccgcgt taacgccagc tggctccatt cagaggtttg
     3541 taacttgact gctctgtaag gaccctttcc tccaaatgat cctggtcaca gatgcgagag
     3601 gtcctgactc ccacatattt gggggaacac tgaacctacc ctagtgggtt ggagttgaag
     3661 gtccctggct gagtggtggg cacccctttt gcatcaaaat gcctcctcag aatgagcaga
     3721 tcgttgtcca tagggactgt agtagcctat acatgcttgc aagagaaagg tcctcagaca
     3781 cagacaaagg tcacctagtg ttttgggttc ccagtcaaga gcagttatgg ttagtcagtg
     3841 gattagcaag gaaatgtcac aagcacaggc agcccctggg ctgggctttg gagagaggct
     3901 ggcatttata tagaaagaaa tgggagaaga gatgagaccc aataaaagac acacacacac
     3961 acacacacac acacacacac acacacacac acacacacac atacacacac actgtccccc
     4021 accccacctc atcccctgca tgttacagtt tttcaacctt ggagtaataa agttttaact
     4081 ttttttcctt ctttatcatt gtgatactta tatgtaacaa attggccaga tagaaaatgt
     4141 gtagatcaga gaaccacctg cctccacctc ttgagctctg agactaaaga cgtgggccac
     4201 cactgcctag ctagagaatt ttttgggggg gttggttgtt ttaagattta tgtattgtat
     4261 gtacacaagt gttttgtctg cacgcatgcc tgtacaccag gaggtgacac atgcataatc
     4321 taaaaaggag ggcggatctc tgaggtcgat gccagcctgg tctacagagt gagtttgagg
     4381 acaggcaggg ctacacaggg
//
